您好，欢迎访问新疆农垦科学院 机构知识库！
新疆农垦科学院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Whole-genome sequencing and comparative genomic analyses of the medicinal fungus Sanguinoderma infundibulare in Ganodermataceae

文献类型： 外文期刊

作者： Fang, Yuxuan 1 ; Wu, Dongmei 2 ; Gao, Neng 2 ; Lv, Mengxue 1 ; Zhou, Miao 1 ; Ma, Chuangui 3 ; Sun, Yifei 1 ; Cui, Baokai 1 ;

作者机构： 1.Beijing Forestry Univ, Sch Ecol & Nat Conservat, State Key Lab Efficient Prod Forest Resources, Beijing 100083, Peoples R China

2.Xinjiang Acad Agr & Reclamat Sci, Biotechnol Res Inst, Key Lab Crop Germplasm Enhancement & Gene Resource, Xinjiang Prod & Construct Grp, Shihezi 832061, Peoples R China

3.Beijing Jingcheng Biotechnol Co Ltd, Beijing 100083, Peoples R China

4.Beijing Forestry Univ, Beijing 100083, Peoples R China

关键词： Sanguinoderma; Ganodermataceae; medicinal fungi; comparative genomic analyses; next-generation sequencing

期刊名称：G3-GENES GENOMES GENETICS （ 影响因子：2.6； 五年影响因子：3.0 ）

ISSN： 2160-1836

年卷期： 2024 年 14 卷 4 期

页码：

收录情况： SCI

摘要： Sanguinoderma infundibulare is a newly discovered species of Ganodermataceae known to have high medicinal and ecological values. In this study, the whole-genome sequencing and comparative genomic analyses were conducted to further understand Ganodermataceae's genomic structural and functional characteristics. Using the Illumina NovaSeq and PacBio Sequel platforms, 88 scaffolds were assembled to obtain a 48.99-Mb high-quality genome of S. infundibulare. A total of 14,146 protein-coding genes were annotated in the whole genome, with 98.6% of complete benchmarking universal single-copy orthologs (BUSCO) scores. Comparative genomic analyses were conducted among S. infundibulare, Sanguinoderma rugosum, Ganoderma lucidum, and Ganoderma sinense to determine their intergeneric differences. The 4 species were found to share 4,011 orthogroups, and 24 specific gene families were detected in the genus Sanguinoderma. The gene families associated with carbohydrate esterase in S. infundibulare were significantly abundant, which was reported to be involved in hemicellulose degradation. One specific gene family in Sanguinoderma was annotated with siroheme synthase, which may be related to the typical characteristics of fresh pore surface changing to blood red when bruised. This study enriched the available genome data for the genus Sanguinoderma, elucidated the differences between Ganoderma and Sanguinoderma, and provided insights into the characteristics of the genome structure and function of S. infundibulare.

  • 相关文献
作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：新疆农垦科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台