Genome-wide identification and expression analysis of the VQ gene family in soybean (Glycine max)
文献类型： 外文期刊
作者： Wang, Yongbin 1 ; Jiang, Zhenfeng 1 ; Li, Zhenxiang 3 ; Zhao, Yuanling 2 ; Tan, Weiwei 2 ; Liu, Zhaojun 2 ; Cui, Shaob 1 ;
作者机构： 1.Northeast Agr Univ, Chinese Agr Minist, Key Lab Soybean Biol & Breeding Genet, Chinese Minist Educ,Key Lab Soybean Biol, Harbin, Heilongjiang, Peoples R China
2.Heilongjiang Acad Agr Sci, Biotechnol Res Inst, Harbin, Heilongjiang, Peoples R China
3.Harbin Normal Univ, Harbin, Heilongjiang, Peoples R China
4.Heilongjiang Acad Agr Sci, Harbin, Heilongjiang, Peoples R China
5.Heilongjiang Acad Agr Sci, Soybean Res Inst, Harbin, Heilongjiang, Peoples R China
关键词： VQ gene family; Glycine max; Gene expression; Phylogenetic analysis; Bioinformatics
期刊名称：PEERJ （ 2020影响因子：2.984； 五年影响因子：3.369 ）
ISSN： 2167-8359
年卷期： 2019 年 7 卷
收录情况： SCI
摘要： Background. VQproteins, the plant-specific transcription factors, are involved in plant development and multiple stresses; however, only few articles systematic reported the VQ genes in soybean. Methods. In total, we identified 75 GmVQ genes, which were classified into 7 groups (I-VII). Conserved domain analysis indicated thatVQgene family members all contain the VQ domains. VQ genes from the same evolutionary branches of soybean shared similar motifs and structures. Promoter analysis revealed that cis-elements related to stress responses, phytohormone responses and controlling physical as well as reproductive growth. Based on the RNA-seq and qRT-PCR analysis, GmVQ genes were showed expressing in nine tissues, suggesting their putative function in many aspects of plant growth and development as well as response to stress in Glycine max. Results. This study aims to understand the roles of VQ genes in various development processes and their expression patterns in responses to stimuli. Our results provide basic information in identification and classification of GmVQ genes. Further experimental analysis will allows us to know the functions of GmVQs participation in plant growth and stress responses.
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