Identification of differentially expressed genes of Haloxylon ammodendron in response to salinity stress
文献类型: 外文期刊
作者: He, J. F. 1 ; Fang, Y. Y. 1 ; Lu, Z. X. 3 ; Wang, L. W. 1 ; Zhao, X. Q. 1 ; Fu, X. F. 1 ; Zhao, J. 2 ; Liu, H. K. 1 ;
作者机构: 1.Inner Mongolia Acad Agr & Anim Husb Sci, Biotechnol Res Ctr, Hohhot 010030, Peoples R China
2.Inner Mongolia Med Univ, Affiliated Hosp, Reprod Ctr, Hohhot 010050, Peoples R China
3.Agr & Agri Food Canada, Lethbridge Res Ctr, Lethbridge, AB T1J 4B1, Canada
关键词: carbon metabolism; drought and salinity tolerance; heat shock proteins; hormone-related genes; NaCl; RNA-Seq; transcription factors
期刊名称:BIOLOGIA PLANTARUM ( 影响因子:1.747; 五年影响因子:2.146 )
ISSN: 0006-3134
年卷期: 2019 年 63 卷
页码:
收录情况: SCI
摘要: Haloxylon ammodendron (C.A. Mey.), an endangered desert tree with excellent drought and salinity tolerance, provides a unique genotype to characterize and understand the tolerance mechanisms. In this study, four RNA-Seq libraries were constructed and sequenced from H. ammodendron under salinity stress. Total 12 027 differentially expressed genes (DEGs) were identified, in which 4 023, 3 517, 4 487 genes were differentially expressed under light salinity stress (200 mM NaCl), moderate salinity stress (400 mM NaCl), and severe salinity stress (800 mM NaCl), respectively. The up-regulated DEGs included several transcription factors (e.g., MYB and bHLH), hormone-related genes (e.g., cytochrome P450), protein kinases (e.g., Atpk2-Atpk19 like), and genes involved in carbon metabolism (e.g., UDP glycosyltransferase), osmotic regulation (e.g., proline transporter), and ubiquitin proteasome system (e.g., ubiquitin-conjugating enzymes). Heat shock proteins were identified as positive regulators of salinity tolerance in H. ammodendron. The expression patterns of 13 DEGs verified by real-time quantitative PCR were identically consistent with the variations in transcript abundance identified by RNA-Seq. Our results provide new insights into molecular mechanism of H. ammodendron in response to salinity stress.
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