文献类型： 外文期刊
作者： Chen, Xueda 1 ; Zhang, Xiuhai 2 ; Liu, Yixin 2 ; Gao, Junlian 2 ; Xing, Zhen 1 ; Du, Yunpeng 2 ;
作者机构： 1.Tibet Agr & Anim Husb Univ, Resources & Environm Coll, Nyingchi 860000, Tibet, Peoples R China
2.Beijing Acad Agr & Forestry Sci, Beijing Agrobiotechnol Res Ctr, Beijing Funct Flower Engn Technol Res Ctr, Beijing Key Lab Agr Genet Resources & Biotechnol, Beijing 100097, Peoples R China
关键词： Nomocharis aperta; high-throughput sequence; complete chloroplast genome; phylogenetic analysis; LiliumNomocharis complex
期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.658； 五年影响因子：0.674 ）
ISSN：
年卷期： 2020 年 5 卷 1 期
页码：
收录情况： SCI
摘要： Nomocharis aperta is an endangered and endemic species with high ornamental value in China. In this study, we reported a complete chloroplast genome of N. aperta, which was de novo assembled using the next-generation sequencing data. The complete chloroplast genome is 152,845 in length, including a large single copy region of 70,506 bp and a small single copy region of 17,468 bp and two inverted repeat regions of 26,520 bp. A total of 130 functional genes were encoded, consisting of 84 protein-coding genes, 36 transfer RNA genes, and 8 ribosomal RNA genes. The overall AT content of the chloroplast genome is 63.00%. In addition, phylogenetic analysis with the reported chloroplast genomes showed that N. aperta is nested within Lilium and close to L. henricii, L. bakerianum and L. taliense. It indicates that the study on the relationship between Nomocharis and Lilium needs more Nomocharis and Lilium complete chloroplast genome, especially some key species like N. aperta.
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