The complete chloroplast genome of Notholirion bulbuliferum, lights into phylogenetic and taxonomic analyses
文献类型： 外文期刊
作者： Li, Jie 1 ; Liu, Yixin 1 ; Wang, Qingjiang 2 ; Chen, Xuqing 1 ; Yang, Fengping 1 ; Zhang, Xiuhai 1 ; Du, Yunpeng 1 ;
作者机构： 1.Beijing Acad Agr & Forestry Sci, Beijing Agrobiotechnol Res Ctr, Beijing Funct Flower Engn Technol Res Ctr, Beijing Key Lab Agr Genet Resources & Biotechnol, Beijing 100097, Peoples R China
2.Hebei Univ Engn, Coll Landscape & Ecol Engn, Handan, Peoples R China
关键词： Notholirion bulbuliferum; complete chloroplast genome; next generation sequencing; phylogenetic analysis
期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.658； 五年影响因子：0.674 ）
ISSN：
年卷期： 2020 年 5 卷 1 期
页码：
收录情况： SCI
摘要： Notholirion bulbuliferum a precious endangered species in China, it has a long history of growth and high ornamental and edible value. In this study, we reported a complete chloroplast genome of N. bulbuliferum, in which the whole genome is 153,019 bp in length, and includes one large single copy region of 70,585 bp, one small single copy region of 17,527 bp, and a pair of inverted repeat region of 26,530 bp. It contains 130 genes, comprising 84 protein-coding genes, 36 transfer RNA, and eight rRNA genes. The overall AT content of the chloroplast genome is 62.9%. In the maximum-likelihood and phylogenetic analysis with the reported chloroplast genomes of Notholirion, it showed that N. bulbuliferum and Notholirion macrophyllum get a high support rate (ML (BS) = 100%) and become sister groups. It indicates that the study on the complete chloroplast genome of N. bulbuliferum is more closely related to Cardiocrinum than related to Lilium.
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