文献类型： 外文期刊

作者： Wang, Yifan ¹ ; Huang, Yiming ¹ ; Zhen, Yongkang ² ; Wang, Jiasheng ² ; Wang, Limin ¹ ; Chen, Ning ¹ ; Wu, Feifan ² ; Zhang, Linna ⁴ ; Shen, Yizhao ⁶ ; Bi, Congliang ⁷ ; Li, Song ³ ; Pool, Kelsey ⁸ ; Blache, Dominique ⁸ ; Maloney, Shane K. ⁸ ; Liu, Dongxu ⁴ ; Yang, Zhiquan ⁴ ; Li, Chuang ² ; Yu, Xiang ² ; Zhang, Zhenbin ² ; Chen, Yifei ² ; Xue, Chun ² ; Gu, Yalan ² ; Huang, Weidong ² ; Yan, Lu ² ; Wei, Wenjun ² ; Wang, Yusu ² ; Zhang, Jinying ² ; Zhang, Yifan ² ; Sun, Yiquan ² ; Wang, Shengbo ⁴ ; Zhao, Xinle ⁴ ; Luo, Chengfang ⁴ ; Wang, Haodong ⁴ ; Ding, Luoyang ² ; Yang, Qing-Yong ¹ ; Zhou, Ping ¹ ; Wang, Mengzhi ² ;

作者机构： 1.Xinjiang Acad Agr Reclamat Sci, State Key Lab Sheep Genet Improvement & Hlth Prod, Shihezi 832000, Peoples R China

2.Yangzhou Univ, Coll Anim Sci & Technol, Yangzhou 225009, Peoples R China

3.Guizhou Univ, Coll Life Sci, Guiyang 550025, Peoples R China

4.Huazhong Agr Univ, Coll Informat, Hubei Key Lab Agr Bioinformat, Wuhan 430070, Peoples R China

5.Huazhong Agr Univ, Coll Informat, Hubei Engn Technol Res Ctr Agr Big Data, Wuhan 430070, Peoples R China

6.Hebei Agr Univ, Coll Anim Sci & Technol, Baoding 071033, Peoples R China

7.Linyi Univ, Coll Life Sci, Linyi 276005, Peoples R China

8.Univ Western Australia, UWA Inst Agr, Perth, WA 6009, Australia

期刊名称：SCIENTIFIC DATA （ 影响因子：9.8； 五年影响因子：10.8 ）

ISSN：

年卷期： 2024 年 11 卷 1 期

页码：

收录情况： SCI

摘要： Domesticated herbivores are an important agricultural resource that play a critical role in global food security, particularly as they can adapt to varied environments, including marginal lands. An understanding of the molecular basis of their biology would contribute to better management and sustainable production. Thus, we conducted transcriptome sequencing of 100 to 105 tissues from two females of each of seven species of herbivore (cattle, sheep, goats, sika deer, horses, donkeys, and rabbits) including two breeds of sheep. The quality of raw and trimmed reads was assessed in terms of base quality, GC content, duplication sequence rate, overrepresented k-mers, and quality score distribution with FastQC. The high-quality filtered RNA-seq raw reads were deposited in a public database which provides approximately 54 billion high-quality paired-end sequencing reads in total, with an average mapping rate of similar to 93.92%. Transcriptome databases represent valuable resources that can be used to study patterns of gene expression, and pathways that are related to key biological processes, including important economic traits in herbivores.