Development and characterization of 29 InDel markers from the Mangrove Kandelia obovata genome using a resequencing dataset
文献类型： 外文期刊
作者： Liu, Xing 1 ; Liu, Yu 1 ; Yang, Sheng 1 ; Wang, Jinwang 1 ; Lu, Xiang 1 ; Wei, Xin 1 ; Wang, Wenqing 2 ; Wang, Jiayu 3 ; Chen, Qiuxia 1 ;
作者机构： 1.Zhejiang Acad Agr Sci, Zhejiang Inst Subtrop Crops, Wenzhou Key Lab Resource Plant Innovat & Utilizat, Wenzhou 325005, Zhejiang, Peoples R China
2.Xiamen Univ, Coll Environm & Ecol, Key Lab Minist Educ Coastal & Wetland Ecosyst, Xiamen 361102, Peoples R China
3.Wenzhou Univ, Coll Life & Environm Sci, Wenzhou 325000, Peoples R China
关键词： Mangrove; Kandelia obovata; InDel markers; Population genetic analysis
期刊名称：CONSERVATION GENETICS RESOURCES （ 影响因子：0.991； 五年影响因子：0.897 ）
ISSN： 1877-7252
年卷期：
页码：
收录情况： SCI
摘要： Insertion-deletion (InDel) markers are widely employed in genetic studies. The rapid advancement of DNA sequencing technology has enabled the development of a large number of InDel makers from the genomes of non-model plants to become more efficient and cost-effective. In this study, we identified 29 polymorphic InDel markers utilized in conservation genetics using the Kandelia obovata genome resequencing dataset. PIC values ranged from 0.186 to 0.375 while the values of H-o and H-e varied from 0.118 to 0.471 and from 0.208 to 0.500, respectively. To the best of our knowledge, this is by far the most extensive set of InDel markers generated for K. obovata. These markers might prove valuable to further the collective understanding of geographically distinct populations, evolutionary relationships, as well as the conservation genetics of K. obovata.
- 相关文献
作者其他论文 更多>>
-
H2S treatment alleviates postharvest chilling injury in green pepper by regulating antioxidant capacity, osmotic regulation and lipid metabolism to maintain cell membrane integrity
作者：Zhao, Liangyi;Lu, Yixia;Zhao, Yaqin;Bao, Yinqiu;Liu, Yu;Wu, Zhengguo;Zheng, Yonghua;Jin, Peng;Han, Yanchao;Chen, Hangjun
关键词：Green pepper; Chilling injury; Hydrogen sulfide; Antioxidant capacity; Membrane lipid metabolism; S-sulfhydration
-
Integrated metabolomic, transcriptomic, and phytohormone analyses revealed sucrose accumulation mechanism of muskmelon (Cucumis melo) during fruit ripening
作者：Xu, Huan-Wen;Wang, Jiang-Yan;Sun, Ji;Zhang, Sheng-Mei;Shui, De-Ju;Wang, Jiang-Yan;Feng, Xi-Bo;Liu, Yu;Liu, Kun
关键词：Muskmelon; RNA-Seq; Plant hormone; Metabolome; Regulatory network
-
Phenotypic adaptation and genomic variation of Kandelia obovata associated with its northern introduction along southeastern coast of China
作者：Zhang, Jiaqi;Ouyang, Sheng;Cai, Xingxing;Yang, Ji;Song, Zhiping;Zhang, Wenju;Wang, Yuguo;Zhu, Yan;Nan, Peng;Zhang, Jiaqi;Ouyang, Sheng;Cai, Xingxing;Yang, Ji;Song, Zhiping;Zhang, Wenju;Wang, Yuguo;Nan, Peng;Zhang, Jiaqi;Ouyang, Sheng;Cai, Xingxing;Yang, Ji;Song, Zhiping;Zhang, Wenju;Wang, Yuguo;Nan, Peng;Yang, Sheng;Chen, Qiuxia
关键词：
Kandelia obovata ; phenotypic adaption; genomic variation; northern introduction; common garden experiment -
Molecular Regulation of Cell Wall Structure During Wood Formation in Forest Trees
作者：Yue, Lei;Wei, Xin;Liu, Shuangshuang;Liu, Xing;Wang, Jinwang;Liu, Huizi;Yue, Lei;An, Xia;Gao, Jinghui;Zhao, Jiali;Lin, Renan
关键词：Wood formation; regulatory network; xylem; transcription factors
-
Assessing Seasonal Effects on Identification of Cultivation Methods of Short-Growth Cycle Brassica chinensis L. Using IRMS and NIRS
作者：Liu, Xing;Fan, Kai;Lu, Yangyang;Zhao, Hong;Rao, Qinxiong;Geng, Hao;Chen, Yijiao;Song, Weiguo;Liu, Xing;Fan, Kai;Lu, Yangyang;Zhao, Hong;Rao, Qinxiong;Geng, Hao;Chen, Yijiao;Song, Weiguo;Rogers, Karyne Maree;Rogers, Karyne Maree
关键词：Brassica chinensis L.; seasonal effect; stable isotope; NIRS; cultivation method; PLS-DA
-
Differentiating Leaf Structures and Physiological Responses to Freezing Stress of Mangrove Kandelia obovata from Different Provenances
作者：Xin, Wenzhen;Liu, Huizi;Liu, Shuangshuang;Yang, Sheng;Wei, Xin;Liu, Xing;Chen, Qiuxia;Xin, Wenzhen;An, Xia;Zhao, Jiali;Lin, Renan
关键词：Kandelia obovata; low temperature; physiological responses; anatomical structure; palisade-to-spongy tissue ratio; SOD
-
Molecular mechanism of salinity and waterlogging tolerance in mangrove Kandelia obovata
作者：Liu, Huizi;Liu, Xing;Yang, Sheng;Liu, Yu;Wei, Xin;Li, Xiaowen;Chen, Qiuxia;Wang, Jinwang;An, Xia
关键词：Kandelia obovata; salt stress; waterlogging stress; transcriptomic analysis; weighted gene co-expression network
