Complete genome sequencing and comparative genome analysis of the extremely halophilic archaea, Haloterrigena daqingensis
文献类型： 外文期刊
作者： Wang, Shuang 1 ; Rao, Manik Prabhu Narsing 3 ; Wei, Dan 2 ; Sun, Lei 1 ; Fang, Bao-Zhu 3 ; Li, Wei-Qun 1 ; Yu, Li-Hong 5 ; Li, Wen-Jun 3 ;
作者机构： 1.Heilongjiang Acad Agr Sci, Heilongjiang Fertilizer Engn Res Ctr, Inst Soil Fertilizer & Environm Resources, Key Lab Soil Environm & Plant Nutr Heilongjiang P, Harbin, Peoples R China
2.Beijing Acad Agr & Forestry Sci, Inst Plant Nutr & Resources, Beijing, Peoples R China
3.Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangdong Prov Key Lab Plant Resources, Guangzhou, Peoples R China
4.Sun Yat Sen Univ, Sch Life Sci, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Guangzhou, Peoples R China
5.Liaoning Green Agr Technol Ctr, Shenyang, Peoples R China
关键词： genome sequencing; halophilic archaea; Haloterrigena daqingensis
期刊名称：BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY （ 影响因子：2.724； 五年影响因子：2.486 ）
ISSN： 0885-4513
年卷期： 2022 年 69 卷 4 期
页码：
收录情况： SCI
摘要： In the present study, we report the complete genome sequencing of Haloterrigena daqingensis species. The genome of H. daqingensis JX313(T) consisted of a circular chromosome with three plasmids. The genome size and G+C content were estimated to be 3835796 bp and 61.7%, respectively. A total of 4158 genes were predicted with six rRNAs and 45 tRNAs. Metabolic pathway analysis suggests that H. daqingensis JX313(T) codes for all the necessary genes responsible to sustain its life at saline environment. The pan-genome analysis suggests that the number of singleton-gene between H. daqingensis and other Haloterrigena species varied. The study not only helps us understand H. daqingensis strategy for dealing with high stress, but it also provides an overview of its genomic makeup.
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