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OsLSC6 Regulates Leaf Sheath Color and Cold Tolerance in Rice Revealed by Metabolite Genome Wide Association Study

文献类型： 外文期刊

作者： Lv, Shuwei 1 ; Tang, Xuan 1 ; Jiang, Liqun 1 ; Zhang, Jing 1 ; Sun, Bingrui 1 ; Liu, Qing 1 ; Mao, Xingxue 1 ; Yu, Hang 1 ; Chen, Pingli 1 ; Chen, Wenfeng 1 ; Fan, Zhilan 1 ; Li, Chen 1 ;

作者机构： 1.Guangdong Acad Agr Sci, Key Lab Genet & Breeding High Qual Rice Southern C, Guangdong Key Lab New Technol Rice Breeding, Rice Res Inst,Guangdong Rice Engn Lab,Minist Agr &, Guangzhou 510640, Peoples R China

关键词： Rice; mGWAS; OsLSC6; Anthocyanin biosynthesis; Cold tolerance

期刊名称：RICE （ 影响因子：5.5； 五年影响因子：5.8 ）

ISSN： 1939-8425

年卷期： 2024 年 17 卷 1 期

页码：

收录情况： SCI

摘要： Plant metabolites including anthocyanins play an important role in the growth of plants, as well as in regulating biotic and abiotic stress responses to the environment. Here we report comprehensive profiling of 3315 metabolites and a further metabolic-based genome-wide association study (mGWAS) based on 292,485 SNPs obtained from 311 rice accessions, including 160 wild and 151 cultivars. We identified hundreds of common variants affecting a large number of secondary metabolites with large effects at high throughput. Finally, we identified a novel gene namely OsLSC6 (Oryza sativa leaf sheath color 6), which encoded a UDP 3-O-glucosyltransferase and involved in the anthocyanin biosynthesis of Cyanidin-3-Galc (sd1825) responsible for leaf sheath color, and resulted in significant different accumulation of sd1825 between wild (purple) and cultivars (green). The results of knockout transgenic experiments showed that OsLSC6 regulated the biosynthesis and accumulation of sd1825, controlled the purple leaf sheath. Our further research revealed that OsLSC6 also confers resistance to cold stress during the seedling stage in rice. And we identified that a SNP in OsLSC6 was responsible for the leaf sheath color and chilling tolerance, supporting the importance of OsLSC6 in plant adaption. Our study could not only demonstrate that OsLSC6 is a vital regulator during anthocyanin biosynthesis and abiotic stress responses, but also provide a powerful complementary tool based on metabolites-to-genes analysis by mGWAS for functional gene identification andpromising candidate in future rice breeding and improvement.

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