The key genes and pathways related to male sterility of eggplant revealed by comparative transcriptome analysis
文献类型： 外文期刊
作者： Yang, Yan 2 ; Bao, Shengyou 2 ; Zhou, Xiaohui 2 ; Liu, Jun 2 ; Zhuang, Yong 1 ;
作者机构： 1.Nanjing Agr Univ, Coll Hort, Nanjing 210095, Jiangsu, Peoples R China
2.Jiangsu Acad Agr Sci, Inst Vegetable Crops, Nanjing 210014, Jiangsu, Peoples R China
3.Jiangsu Key Lab Hort Crop Genet Improvement, Nanjing 210014, Jiangsu, Peoples R China
关键词： Eggplant; Male sterility; RNA-seq; DEGs
期刊名称：BMC PLANT BIOLOGY （ 影响因子：4.215； 五年影响因子：4.96 ）
ISSN： 1471-2229
年卷期： 2018 年 18 卷
页码：
收录情况： SCI
摘要： Background: Male sterility (MS) is an effective tool for hybrid production. Although MS has been widely reported in other plants, such as Arabidopsis and rice, the molecular mechanism of MS in eggplant is largely unknown. To understand the mechanism, the comparative transcriptomic file of MS line and its maintainer line was analyzed with the RNA-seq technology. Results: A total of 11,7695 unigenes were assembled and 19,652 differentially expressed genes (DEGs) were obtained. The results showed that 1,716 DEGs were shared in the three stages. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that these DEGs were mainly involved in oxidationreduction, carbohydrate and amino acid metabolism. Moreover, transcriptional regulation was also the impact effector for MS and anther development. Weighted correlation network analysis (WGCNA) showed two modules might be responsible for MS, which was similar to hierarchical cluster analysis. Conclusions: A number of genes and pathways associated with MS were found in this study. This study threw light on the molecular mechanism of MS and identified several key genes related to MS in eggplant.
- 相关文献
作者其他论文 更多>>
-
IDENTIFICATION AND ANALYSIS OF PORK FRESHNESS QUALITY BASED ON IMPROVED MOBILENETV3
作者：Zhou, Chenggang;Pi, Jie;Liu, Jun;Chen, Xiao;Wang, Daoying
关键词：Deep learning; MobileNetV3 network; Non-destructive testing; Pork freshness
-
Decoupling and Collaboration: An Intelligent Gateway-Based Internet of Things System Architecture for Meat Processing
作者：Liu, Jun;Zhou, Chenggang;Wei, Haoyuan;Liu, Jun;Pi, Jie;Wang, Daoying
关键词：meat processing; intelligent gateways; Internet of Things; edge computing; decoupling collaborative design
-
Tomato TGase positively regulates thermotolerance by inducing polyamine to activate autophagy
作者：Zhong, Min;Cui, Qingshen;Yang, Yan;Zhang, Ke;Liu, Xiaoying;Pang, Guan;Yang, Lifei;Guo, Shirong;Sun, Jin;Wang, Yu;Zhong, Min;Yang, Yan
关键词：
ATG ; heat stress;Solanum lycopersicum ; spermidine; transglutaminases -
Effects of high-concentration sulfamethoxazole on antibiotic resistance genes during swine manure aerobic composting
作者：Ma, Shuangshuang;Ding, Jingtao;Zhou, Haibin;Shen, Yujun;Wang, Jian;Chen, Yanxin;Yang, Yan;Ma, Shuangshuang;Ding, Jingtao;Zhou, Haibin;Shen, Yujun;Wang, Jian;Chen, Yanxin;Yang, Yan;Wang, Li;Wang, Li
关键词：Sulfamethoxazole; Aerobic composting; Antibiotic resistance gene; Microbial community; Mobile genetic element
-
Research on Beef Marbling Grading Algorithm Based on Improved YOLOv8x
作者：Liu, Jun;Wang, Lian;Liu, Jun;Xu, Huafu;Liu, Jun;Pi, Jie;Wang, Daoying
关键词：beef marbling; deep learning; YOLOv8x; ROI algorithm; machine vision; grading
-
Eggplant WRKY26 functions as a positive regulator of cold tolerance by inducing autophagy
作者：Yang, Yan;Liu, Jun;Zhou, Xiaohui;Liu, Songyu;Obel, Hesbon Ochieng;Zhuang, Yong;Yang, Yan;Wang, Yu;Zhuang, Yong
关键词：Eggplant; SmWRKY26; Transcription factor; Cold tolerance; Autophagy
-
Genome-Wide Identification of ATP-Binding Cassette (ABC) Transporter Gene Family and Their Expression Analysis in Response to Anthocyanin Transportation in the Fruit Peel of Eggplant (Solanum melongena L.)
作者：Obel, Hesbon Ochieng;Zhou, Xiaohui;Liu, Songyu;Yang, Yan;Liu, Jun;Zhuang, Yong;Obel, Hesbon Ochieng;Zhou, Xiaohui;Liu, Songyu;Yang, Yan;Liu, Jun;Zhuang, Yong;Xing, Liwei
关键词：eggplant; ABC gene family; anthocyanin; fruit peel color
