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Independent modulation of individual genomic component transcription and a cis-acting element related to high transcriptional activity in a multipartite DNA virus

文献类型： 外文期刊

作者： Yu, Nai-Tong 3 ; Xie, Hui-Min 3 ; Zhang, Yu-Liang 3 ; Wang, Jian-Hua 3 ; Xiong, Zhongguo 1 ; Liu, Zhi-Xin 3 ;

作者机构： 1.Univ Arizona, Sch Plant Sci, Tucson, AZ 85721 USA

2.Univ Arizona, Inst BIO5, Tucson, AZ 85721 USA

3.Chinese Acad Trop Agr Sci, Inst Trop Biosci & Biotechnol, Minist Agr & Rural Affairs, Key Lab Biol & Genet Resources Trop Crops, Haikou 571101, Hainan, Peoples R China

关键词： Multipartite DNA virus; Banana bunchy top virus; Transcription; Independent modulation; Cis-acting element

期刊名称：BMC GENOMICS （ 影响因子：3.969； 五年影响因子：4.478 ）

ISSN： 1471-2164

年卷期： 2019 年 20 卷

页码：

收录情况： SCI

摘要： BackgroundThe genome of Banana bunchy top virus (BBTV) consists of at least six circular, single-stranded DNA components of 1kb in length. Some BBTV isolates may also carry satellite DNA molecules that are not essential for BBTV infection. The relation between multipartite DNA virusreplication and their transcriptional levels and the underlying mechanism remain unclear.ResultsTo understand the coordinated replication and transcription of the multiple genomic components, the absolute amounts of each BBTV DNA component were measured by real-time PCR (qPCR), and their transcriptional levels were determined by RNAseq and reverse transcription-qPCR (qRT-PCR). Significant differences were found in the absolute amounts of individual BBTV genomic components. Transcriptional levels of each BBTV genomic component obtained from the RNAseq data matched closely to those obtained from qRT-PCR, but did not correspond to the absolute amount of each DNA component. The ratio of transcript over DNA copies ranged from 46.21 to 1059.44%, which was possibly regulated by the promoter region in the intergenic region of each component. To further determine this speculation, the promoter region of the DNA-S, -M or -N was constructed to the upstream of green fluorescent protein (GFP) gene for transient expression by agrobacterium-mediated transformation method. The qRT-PCR showed the highest transcriptional activity was promoted by DNA-N promoter, about 386.58% activity comparing with CaMV 35S promoter. Confocal microscopy observation showed that the intensity of green fluorescence was corresponding to that of qRT-PCR.ConclusionsOur data clearly showed that BBTV was able to control the transcriptional level of each DNA component independently by through the promoter sequences in the intergenic region. Moreover, a cis-acting element from DNA-N component had a high transcriptional activity.

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