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scRNA-seq Reveals the Mechanism of Fatty Acid Desaturase 2 Mutation to Repress Leaf Growth in Peanut (Arachis hypogaea L.)

文献类型： 外文期刊

作者： Du, Puxuan 1 ; Deng, Quanqing 1 ; Wang, Wenyi 2 ; Garg, Vanika 3 ; Lu, Qing 1 ; Huang, Lu 1 ; Wang, Runfeng 1 ; Li, Haifen 1 ; Huai, Dongxin 4 ; Chen, Xiaoping 1 ; Varshney, Rajeev K. 3 ; Hong, Yanbin 1 ; Liu, Hao 1 ;

作者机构： 1.Guangdong Acad Agr Sci GDAAS, Crops Res Inst, South China Peanut Sub Ctr, Guangdong Prov Key Lab Crop Genet Improvement,Nat, Guangzhou 510640, Peoples R China

2.South China Agr Univ, Coll Agr, Guangzhou 510642, Peoples R China

3.Murdoch Univ MU, WA State Agr Biotechnol Ctr, Ctr Crop & Food Innovat, Food Futures Inst, Murdoch, WA 6150, Australia

4.Chinese Acad Agr Sci, Key Lab Biol & Genet Improvement Oil Crops, Minist Agr & Rural Affairs, Oil Crops Res Inst, Wuhan 430062, Peoples R China

关键词： scRNA-seq; peanut leaf; FAD2; oleic acids; gene atlases

期刊名称：CELLS （ 影响因子：6.0； 五年影响因子：6.7 ）

ISSN：

年卷期： 2023 年 12 卷 18 期

页码：

收录情况： SCI

摘要： Fatty Acid Desaturase 2 (FAD2) controls the conversion of oleic acids into linoleic acids. Mutations in FAD2 not only increase the high-oleic content, but also repress the leaf growth. However, the mechanism by which FAD2 regulates the growth pathway has not been elucidated in peanut leaves with single-cell resolution. In this study, we isolated fad2 mutant leaf protoplast cells to perform single-cell RNA sequencing. Approximately 24,988 individual cells with 10,249 expressed genes were classified into five major cell types. A comparative analysis of 3495 differentially expressed genes (DEGs) in distinct cell types demonstrated that fad2 inhibited the expression of the cytokinin synthesis gene LOG in vascular cells, thereby repressing leaf growth. Further, pseudo-time trajectory analysis indicated that fad2 repressed leaf cell differentiation, and cell-cycle evidence displayed that fad2 perturbed the normal cell cycle to induce the majority of cells to drop into the S phase. Additionally, important transcription factors were filtered from the DEG profiles that connected the network involved in high-oleic acid accumulation (WRKY6), activated the hormone pathway (WRKY23, ERF109), and potentially regulated leaf growth (ERF6, MYB102, WRKY30). Collectively, our study describes different gene atlases in high-oleic and normal peanut seedling leaves, providing novel biological insights to elucidate the molecular mechanism of the high-oleic peanut-associated agronomic trait at the single-cell level.

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