Chromosome-Level Genome Assembly of Protosalanx chinensis and Response to Air Exposure Stress
文献类型： 外文期刊
作者： Zhou, Yanfeng 1 ; Zhang, Xizhao 2 ; Tang, Xuemei 3 ; Zhou, Yifan 3 ; Ding, Yuting 3 ; Liu, Hong 1 ;
作者机构： 1.Huazhong Agr Univ, Coll Fisheries, Engn Res Ctr Green Dev Convent Aquat Biol Ind Yang, Key Lab Freshwater Anim Breeding,Minist Agr & Rura, Wuhan 430070, Peoples R China
2.Chinese Acad Fishery Sci, Freshwater Fisheries Res Ctr, Key Lab Freshwater Fisheries & Germplasm Resources, Minist Agr & Rural Affairs, Wuxi 214081, Peoples R China
3.Nanjing Agr Univ, Wuxi Fisheries Coll, Wuxi 214081, Peoples R China
关键词： Protosalanx chinensis; chromosome-level genome; air exposure stress
期刊名称：BIOLOGY-BASEL （ 影响因子：4.2； 五年影响因子：4.4 ）
ISSN：
年卷期： 2023 年 12 卷 9 期
页码：
收录情况： SCI
摘要： Protosalanx chinensis is a suitable particular species for genetic studies on nearly scaleless skin, transparency and high sensitivity to hypoxia stress. Here, we generated a high-quality chromosome-level de novo assembly of P. chinensis. The final de novo assembly yielded 379.47 Mb with 28 pseudo-chromosomes and a scaffold N50 length of 14.52 Mb. In total, 21,074 protein-coding genes were predicted. P. chinensis, Esox lucius and Hypomesus transpacificus had formed a clade, which diverged about 115.5 million years ago. In the air exposure stress experiment, we found that some genes play an essential role during P. chinensis hypoxia, such as bhlh, Cry1, Clock, Arntl and Rorb in the circadian rhythm pathway. These genomic data offer a crucial foundation for P. chinensis ecology and adaptation studies, as well as a deeper understanding of the response to air exposure stress.
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