Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor
文献类型: 外文期刊
作者: Yu, Yang 1 ; Guan, Jiantao 1 ; Xu, Yaoguang 1 ; Ren, Fei 2 ; Zhang, Zhengquan 1 ; Yan, Juan 3 ; Fu, Jun 1 ; Guo, Jiying 2 ;
作者机构: 1.Acad Agr & Forestry Sci, Beijing Key Lab Agr Genet Resources & Biotechnol, Beijing Agrobiotechnol Res Ctr, Beijing, Peoples R China
2.Beijing Acad Agr & Forestry Sci, Beijing Acad Forestry & Pomol Sci, Beijing, Peoples R China
3.Jiangsu Acad Agr Sci, Jiangsu Key Lab Hort Crop Genet Improvement, Inst Pomol, Nanjing, Peoples R China
期刊名称:NATURE COMMUNICATIONS ( 影响因子:14.919; 五年影响因子:15.805 )
ISSN:
年卷期: 2021 年 12 卷 1 期
页码:
收录情况: SCI
摘要: A narrow genetic basis in modern cultivars and strong linkage disequilibrium in peach (Prunus persica) has restricted resolution power for association studies in this model fruit species, thereby limiting our understanding of economically important quality traits including fruit flavor. Here, we present a high-quality genome assembly for a Chinese landrace, Longhua Shui Mi (LHSM), a representative of the Chinese Cling peaches that have been central in global peach genetic improvement. We also map the resequencing data for 564 peach accessions to this LHSM assembly at an average depth of 26.34x per accession. Population genomic analyses reveal a fascinating history of convergent selection for sweetness yet divergent selection for acidity in eastern vs. western modern cultivars. Molecular-genetics and biochemical analyses establish that PpALMT1 (aluminum-activated malate transporter 1) contributes to their difference of malate content and that increases fructose content accounts for the increased sweetness of modern peach fruits, as regulated by PpERDL16 (early response to dehydration 6-like 16). Our study illustrates the strong utility of the genomics resources for both basic and applied efforts to understand and exploit the genetic basis of fruit quality in peach. Longhua Shui Mi (LHSM) is a representative of the Chinese Cling peaches that have been central in global peach genetic improvement. Here, the authors assemble the genome of LHSM and show convergent selection for sweetness yet divergent selection for acidity in eastern vs. western cultivars through population genomics analyses.
- 相关文献
作者其他论文 更多>>
-
Integrated transcriptomic and metabolomic analyses reveal the toxic effects of dimethoate on green vegetable soya bean seedlings
作者:Li, Yitong;Yu, Yang;Gou, Meng;Zhang, Linqing;Li, Yongfeng;Yu, Yang
关键词:Glycine max merr; Green vegetable soya beans; Metabolomics; Transcriptomics; Dimethoate
-
Effects of paper pouches of different light transmittance on the phenolic synthesis and related gene expression in peach fruit
作者:Su, Ziwen;Yu, Mingliang;Su, Ziwen;Yan, Juan;Zhang, Binbin;Sun, Meng;Cai, Zhixiang;Shen, Zhijun;Ma, Ruijuan;Yu, Mingliang
关键词:Peach; Bagging; Light intensity; Phenolic compounds; Gene expression
-
Analysis of volatile compounds and metabolic mechanisms of stony hard peach after ethylene treatment
作者:Meng, Peiyu;Su, Ziwen;Yu, Mingliang;Shen, Zhijun;Zhang, Yuanyuan;Guo, Shaolei;Li, Shenge;Yu, Mingliang
关键词:Stony hard peach; Ethylene; Volatile compounds; Transcriptomic analysis
-
Expression and antiviral application of exogenous lectin (griffithsin) in sweetpotatoes
作者:Liu, Shuai;Yu, Yang;Guo, Ke;Zhang, Qian;Jia, Zhaodong;Ma, Peiyong;Bian, Xiaofeng;Alfredo, Morales Rodriguez;Xie, Hao
关键词:griffithsin; sweetpotato (Ipomoea batatas (L.) Lam); sweetpotato virus disease; sweetpotato leaf curl virus; antiviral genes
-
Effect of melatonin treatment on improving jasmonates content and cell wall stability involved in enhanced chilling tolerance of peach fruit during cold storage
作者:Li, Shenge;Ma, Ruijuan;Xu, Jianlan;Shen, Zhijun;Yu, Mingliang
关键词:Peach fruit; Chilling injury; Melatonin; Transcriptome analysis; Jasmonic acid signaling pathway
-
The microRNA ppe-miR393 mediates auxin-induced peach fruit softening by promoting ethylene production
作者:Ma, Li;Zhao, Yingjie;Li, Yichen;Cao, Yang;Wu, Di;Shi, Yanna;Chen, Kunsong;Chen, Miaojin;Shen, Zhijun;Yu, Mingliang;Wu, Di;Shi, Yanna;Chen, Kunsong;Wu, Di;Grierson, Donald;Shi, Yanna;Chen, Kunsong;Grierson, Donald
关键词:
-
Integrated analysis of HSP20 genes in the developing flesh of peach: identification, expression profiling, and subcellular localization
作者:Zhang, Chunhua;Su, Ziwen;Shen, Zhijun;Song, Hongfeng;Cai, Zhixiang;Xu, Jianlan;Guo, Lei;Zhang, Yuanyuan;Guo, Shaolei;Sun, Meng;Li, Shenge;Yu, Mingliang;Zhang, Yanping
关键词:Peach; HSP20 family; Subfamily classification; Motif composition; Exon/intron organization; Expression profiling; Subcellular location



