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Isolation of a Novel QTL, qSCM4, Associated with Strong Culm Affects Lodging Resistance and Panicle Branch Number in Rice

文献类型： 外文期刊

作者： Yang, Xianli 1 ; Lai, Yongcai 1 ; Wang, Lizhi 1 ; Zhao, Minghui 4 ; Wang, Jiayu 4 ; Li, Mingxian 1 ; Chi, Liyong 1 ; Lv, Guoyi 1 ; Liu, Youhong 1 ; Cui, Zhibo 1 ; Li, Rui 1 ; Wu, Liren 1 ; Sun, Bing 1 ; Zhang, Xijuan 1 ; Jiang, Shukun 2 ;

作者机构： 1.Heilongjiang Acad Agr Sci, Crop Cultivat & Tillage Inst, Harbin 150086, Peoples R China

2.Heilongjiang Prov Engn Technol Res Ctr Crop Cold D, Heilongjiang Prov Key Lab Crop Physiol & Ecol Cold, Harbin 150086, Peoples R China

3.Northeast Ctr Natl Salt Alkali Tolerant Rice Techn, Harbin 150086, Peoples R China

4.Shenyang Agr Univ, Rice Res Inst, Collaborat Innovat Ctr, Liaoning Prov Govt & Minist Educ Northeast Japon R, Shenyang 110161, Peoples R China

5.Heilongjiang Acad Agr Sci, Qiqihar Branch, Qiqihar 161006, Peoples R China

关键词： rice; lodging resistance; functional analysis; qSCM4; candidate gene

期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.6； 五年影响因子：6.2 ）

ISSN：

年卷期： 2023 年 24 卷 1 期

页码：

收录情况： SCI

摘要： Rice breeders are now developing new varieties with semi-high or even high plant height to further increase the grain yield, and the problem of lodging has re-appeared. We identified a major quantitative trait locus (QTL), qSCM4, for resistance to lodging by using an F-2 segregant population and a recombinant self-incompatible line population from the cross between Shennong265 (SN265) and Lijiangxintuanheigu (LTH) after multiple years and multiple environments. Then, the residual heterozygous derived segregant population which consisted of 1781 individual plants, and the BC3F2 segregant population which consisted of 3216 individual plants, were used to shorten the physical interval of qSCM4 to 58.5 kb including 11 genes. DNA sequencing revealed the most likely candidate gene for qSCM4 was Os04g0615000, which encoded a functional protein with structural domains of serine and cysteine. There were 13 DNA sequence changes in LTH compared to SN265 in this gene, including a fragment deletion, two base changes in the 3 ' UTR region, six base changes in the exons, and four base changes in the introns. A near-isogenic line carrying qSCM4 showed that it improved the lodging resistance through increasing stem thickness by 25.3% and increasing stem folding resistance by 20.3%. Furthermore, it was also discovered that qSCM4 enhanced the primary branch per panicle by 16.7%, secondary branch by per panicle 9.9%, and grain number per panicle by 14.7%. All the above results will give us a valuable genetic resource for concurrently boosting culm strength and lodging resistance, and they will also provide a basis for further research on the lodging resistance mechanism of rice.

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