您好，欢迎访问上海市农业科学院 机构知识库！
上海市农业科学院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Near telomere-to-telomere assembly of the Tarim pigeon (Columba livia) genome

文献类型： 外文期刊

作者： Yang, Wenhao 1 ; Zhou, Hao 1 ; Huang, Jinlong 1 ; Zhu, Wenqi 1 ; Hou, Haobin 3 ; Li, Hejun 4 ; Zhao, Lele 4 ; Zhang, Jiang 4 ; Liu, Jiajia 1 ; Qin, Chao 1 ; Wang, Liyuan 1 ; Luo, Huaixi 1 ; Zhu, Jianshen 1 ; Xiao, Fuquan 1 ; Yao, Junfeng 3 ; Yang, Changsuo 3 ; Meng, He 1 ;

作者机构： 1.Shanghai Jiao Tong Univ, Sch Agr & Biol, Dept Anim Sci, Shanghai 200240, Peoples R China

2.Shanghai Jiao Tong Univ, Sch Pharm, Shanghai 200240, Peoples R China

3.Shanghai Acad Agr Sci, Shanghai 201106, Peoples R China

4.Shanghai Vocat Coll Agr & Forestry, Shanghai 201699, Peoples R China

期刊名称：SCIENTIFIC DATA （ 影响因子：6.9； 五年影响因子：8.7 ）

ISSN：

年卷期： 2024 年 11 卷 1 期

页码：

收录情况： SCI

摘要： Pigeons serve as important model animals and commercial poultry. The Tarim pigeon, as a breed of Columba livia, is a locally indigenous breed unique to China. While the genome of C. livia was published in 2013, its assembly was fragmented and incomplete. In this study, we generated a near telomere-to-telomere assembly of the pigeon genome using the sequencing platform of PacBio HiFi, Nanopore long reads and Hi-C. The assembled genome spans 1295.8 Mb, with a contig N50 size of 49 Mb and a scaffold N50 size of 85 Mb. Approximately 98.4% of the assembly is anchored onto 41 chromosomes, with a BUSCO assessment indicating a completeness of 97.2%. And telomeres were identified at both ends of the four chromosomes. A total of 21,450 genes were annotated. The genome assembly of C. livia lays the foundation for understanding their genetic composition and evolutionary history and contributes to the pigeon breeding industry. Additionally, it will provide a basis for further management and conservation of pigeon breed diversity.

  • 相关文献
作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：上海市农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台