Genetic diversity within Oryza rufipogon germplasms preserved in Chinese field gene banks of wild rice as revealed by microsatellite markers
文献类型： 外文期刊
作者： Gao, Li-Zhi 1 ; Zhang, Chi-Hong 1 ; Li, Dao-Yuan 1 ; Pan, Da-Jian 2 ; Jia, Ji-Zeng; Dong, Yu-Shen;
作者机构： 1.Guangxi Acad Agr Sci, Guangxi Field Gene Bank Wild Rice, Inst Crop Germplasm Resources, Nanning 530007, Peoples R China; Guangdong Acad Agr Sci, Guangzhou Field Gene Bank Wild Rice, Rice Res Inst, Guangzhou 510640, Peoples R China; Chinese Acad Agr Sci, Inst Crop Germplasm Resources, Beijing 100081, Peoples R China
2.Guangxi Acad Agr Sci, Guangxi Field Gene Bank Wild Rice, Inst Crop Germplasm Resources, Nanning 530007, Peoples R China; Guangdong Acad Agr Sci, Guangzhou Field Gene Bank Wild Rice, Rice Res Inst, Guangzhou 510640, Peoples R China; Chinese Acad Agr Sci, Inst Crop Ger
关键词： Biodiversity;Conservation;Domestication;Biodiversity;Conservation;Domestication;Evolution;Gene polymorphism;Genetic diversity;Genetic markers;Germplasm;Microsatellites;Phylogeny;Plant breeding;Sampling;Oryza rufipogon;Oryza sativa
期刊名称：BIODIVERSITY AND CONSERVATION （ 影响因子：3.549； 五年影响因子：3.915 ）
ISSN：
年卷期：
页码：
收录情况： SCI
摘要： Nineteen microsatellite markers were employed to evaluate the genetic diversity of 92 accessions of common wild rice Oryza rufipogon Griff., which represent a significant portion of the distribution range from field gene banks of China. In comparison, a total of 57 varieties from most of the rice growing areas in China were also analyzed. The microsatellite analysis revealed a considerable amount of genetic diversity resided within the preserved wild rice germplasms. In all, the nineteen microsatellites revealed 328 alleles. The number of alleles per locus varied widely among these markers, ranging from 6 at RM242 to 30 at RM206. A comparison of the genetic parameters showed that wild rice strains preserved in the field gene banks (na = 17.27; R sub(S) = 15.66; H sub(S) = 0.86; H sub(T) = 0.852; H sub(O) = 0.307) possess much higher genetic diversity than cultivated rice varieties (na = 8.27; R sub(S) = 8.14; H sub(S) = 0.75; H sub(T) = 0.758; H sub(O) = 0.051). A total of 196 alleles detected in the wild rice could not be found in cultivated rice, suggesting that about 60% of the alleles of wild rice might be lost during the process of rice domestication. This result shows that these ex situ preserved wild rice strains are of great importance for the discovery and utilization of novel genes in the future rice breeding practices. Considerably abundant genetic variability detected within the studied wild rice germplasms could be comparable to that previously found in a wide sampling of 47 natural populations (na = 16.17; H sub(S) = 0.67; H sub(O) = 0.229), demonstrating that developing field gene banks of wild rice is a necessary and efficient way for preserving genetic diversity of wild rice resources. To determine minimum microsatellites that could distinguish these wild rice accessions, the phylogenetic trees constructed by means of the combinations of different microsatellites suggested that the five highly polymorphic microsatellites could clearly identify these samples. High polymorphisms of rice microsatellite loci and their great resolving power will be particularly helpful for germplasm evaluation and evolutionary studies for better strengthening the conservation and utilization of genetic diversity of wild rice in the field gene banks.
- 相关文献
作者其他论文 更多>>
-
Genomic and transcriptomic analysis reveal molecular basis of salinity tolerance in a novel strong salt-tolerant rice landrace Changmaogu
作者：Sun, Bing-Rui;Fu, Chong-Yun;Fan, Zhi-Lan;Chen, Yu;Chen, Wen-Feng;Zhang, Jing;Jiang, Li-Qun;Lv, Shuwei;Pan, Da-Jian;Li, Chen;Fan, Zhi-Lan;Chen, Yu;Chen, Wen-Feng;Zhang, Jing;Jiang, Li-Qun;Lv, Shuwei;Pan, Da-Jian;Li, Chen
关键词：Rice landrace; Salt tolerance; BSA-seq; Transcriptome sequencing
