Whole-transcriptome sequencing reveals the global molecular responses and ceRNA regulatory network involved in programmed cell death of rice cultivars zyk639 and zyk-lm
文献类型： 外文期刊
作者： Zhang, Haipeng 1 ; Zheng, Han 1 ; Liang, Weifang 2 ; Zhang, Junjie 3 ; Zhao, Hongyu 1 ; Li, Jianzhong 4 ; Zhou, Yujie 5 ; Xie, Liujie 6 ; Yu, Chulang 7 ; Dai, Binfeng 8 ; Zhong, Liequan 8 ; Hou, Fan 9 ; Wang, Chengyu 1 ; Chen, Jianping 2 ; Yang, Yong 2 ;
作者机构： 1.Anhui Agr Univ, Coll Agron, Hefei 230036, Peoples R China
2.Zhejiang Acad Agr Sci, Inst Virol & Biotechnol, StateKey Lab Qual & Safety Agroprod, Key Lab Biotechnol Plant Protect MOA China & Zheji, Hangzhou 310021, Peoples R China
3.Guangzhou Gene Denovo Biotechnol Co Ltd, Guangzhou 510000, Peoples R China
4.Qujiang Dist Agr Technol Extens Ctr, Quzhou 324022, Peoples R China
5.Zhuji Agr Technol Extens Ctr, Zhuji 311800, Peoples R China
6.Taizhou Acad Agr Sci, Taizhou 318000, Peoples R China
7.Ningbo Univ, Inst Plant Virol, State Key Lab Qual & Safety Agroprod, Key Lab Biotechnol Plant Protect MOA China & Zheji, Ningbo 315211, Peoples R China
8.Taizhou Agroecol Protect & Qual Safety Ctr, Taizhou 318000, Peoples R China
9.Wuwangnong Seed shareholding Co Ltd, Hangzhou 310020, Peoples R China
关键词： PCD; Whole-transcriptome; LncRNA; WGCNA; ce-RNA
期刊名称：BMC GENOMICS （ 影响因子：3.7； 五年影响因子：4.2 ）
ISSN： 1471-2164
年卷期： 2025 年 26 卷 1 期
页码：
收录情况： SCI
摘要： BackgroundProgrammed cell death (PCD) can be triggered by biotic stress or abiotic stress in rice, which is a crucial factor throughout the lifecycle. Long non-coding RNAs (lncRNAs) have important roles in a variety of biological processes. However, the regulatory relationship between lncRNAs and rice PCD occurrence is unclear.MethodsIn this study, messenger RNAs (mRNAs) and lncRNAs associated with PCD regulation were identified in two rice cultivars: japonica rice (Oryza sativa) cultivar zheyoukang639 (zyk639) and its mutant zyk639-lesion mimic (zyk-lm). Besides, these data were used for weighted gene co-expression analysis (WGCNA) and construction of competitive endogenous RNAs (ceRNAs).ResultsAs a result, 5,289 lncRNAs and 39,475 mRNAs were identified, of which 1,873 lncRNAs and 11,930 mRNAs were differentially expressed. In addition, WGCNA showed that the blue module was critical for the development of PCD in rice. The construction of the ceRNA regulatory network associated with the occurrence of PCD in rice identified 101 pairs of relationships, including 9 lncRNAs, 11 miRNAs and 76 mRNAs. Importantly, three major lncRNAs in zyk-lm, including MSTRG.24301.2, MSTRG.17476.1 and MSTRG.24898.1, may be involved in leaf PCD, with MSTRG.24898.1 binding to osa-miR580 to regulate transcription factors. Furthermore, the lncRNAs co-expression mRNAs rpl27-1 and OsRPS27, which were associated with ribosomal genesis, and Os11g0490900, a WRKY family transcription factor, may also regulate PCD genesis.ConclusionsModels of protein synthesis regulation associated with zyk-lm PCD were discussed, lncRNAs may serve as key factors in regulating PCD and provide ideas for understanding PCD and genetic messaging.
- 相关文献
作者其他论文 更多>>
-
Identification of the microorganisms for methane-dependent arsenate reduction in wetland using DNA-stable isotope probing and metagenomics
作者：Yu, Xiaoxiao;Zhou, Yujie;Chen, Yun;Xu, Jianming;Tang, Xianjin;Li, Jibing;Luo, Chunling;Li, Jibing;Luo, Chunling;Zou, Lina;Shen, Chaofeng;Liu, Fengjie;Tang, Xianjin
关键词：Methane oxidation; Arsenate reduction; DNA-SIP; Metagenomic; Wetland
-
Travel Characteristics of Urban Residents Based on Taxi Trajectories in China: Beijing, Shanghai, Shenzhen, and Wuhan
作者：Chang, Xueli;Chen, Haiyang;Li, Jianzhong;Fei, Xufeng;Xu, Haitao;Xiao, Rui
关键词：traffic sustainability; residents travel pattern; urban morphology; least squares regression; geographically weighted regression
-
Microbial carbon and phosphorus metabolism regulated by C:N:P stoichiometry stimulates organic carbon accumulation in agricultural soils
作者：Wang, Xiangxiang;Zhang, Hongrui;Cao, Dan;Wei, Liang;Wang, Shuang;Ding, Jina;Chen, Jianping;Ge, Tida;Zhu, Zhenke;Wang, Xiangxiang;Zhang, Hongrui;Cao, Dan;Wu, Cuiyan;Wang, Xianting;Guo, Bin;Chen, Hao
关键词：Soil nutrients; Microbial metabolism; Ecoenzymatic stoichiometry; Microbial carbon use efficiency
-
Low-dose of oligosaccharins boosts antiviral immunity through induction of multiple defense pathways in rice
作者：Wang, Guoda;Lu, Mingmin;He, Qianqian;Du, Juan;Li, Lulu;Zhang, Hehong;Wei, Zhongyan;Lu, Yuwen;Chen, Jianping;Sun, Zongtao;Li, Yanjun;Song, Wen
关键词：Oligosaccharins; Plant immunity; Jasmonic acid (JA); Reactive oxygen species (ROS); Antiviral defense; Southern rice black-streaked dwarf virus (SRBSDV); Low-dose
-
Identification and Genome Sequencing of Novel Virulent Strains of Xanthomonas oryzae pv. oryzae Causing Rice Bacterial Blight in Zhejiang, China
作者：Liang, Weifang;Chen, Jianping;Liang, Weifang;Zhou, Yuhang;Chen, Xinyu;Chen, Jianping;Yang, Yong;Zhou, Yuhang;Xu, Zhongtian;Li, Yiyuan;Yu, Chulang;Chen, Jianping;Chen, Xinyu;Hou, Fan;Dai, Binfeng;Zhong, Liequan;Bi, Ji-An;Yan, Chengqi;Xie, Liujie
关键词：avirulence gene; genome sequencing; TAL effector;
Xanthomonas oryzae pv.oryzae -
Metabarcoding reveals response of rice rhizosphere bacterial community to rice bacterial leaf blight
作者：Jiang, Hubiao;Xu, Xinyan;Ogunyemi, Solabomi Olaitan;Ahmed, Temoor;Li, Bin;Fang, Yuan;Li, Xuqing;Yang, Yong;Yan, Chengqi;Chen, Jianping;Fang, Yuan;Chen, Jianping;Li, Bin
关键词：Bacterial leaf blight; Rice; 16S rRNA gene sequence; Rhizosphere; Microbial community
-
The peroxidase gene OsPrx114 activated by OsWRKY50 enhances drought tolerance through ROS scavenging in rice
作者：Zheng, Chao;Chen, Jianping;Zheng, Chao;Wang, Xuming;Xu, Yue;Liu, Xiuli;Cui, Weijun;Yan, Chengqi;Liu, Hongjia;Chen, Jianping;Zhou, Jie;Wu, Yueyan;Yan, Chengqi;Wang, Shaomin;Jiang, Xin;Lu, Yin
关键词：Drought tolerance; OsPrx114; OsWRKY50; Rice; ROS scavenging
