您好，欢迎访问中国热带农业科学院 机构知识库！
中国热带农业科学院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Mining EST-Derived SSR Markers to Assess Genetic Diversity in Cassava (Manihot esculenta Crantz)

文献类型： 外文期刊

作者： Zou, Meiling 1 ; Xia, Zhiqiang 1 ; Ling, Peng 2 ; Zhang, Yang 1 ; Chen, Xin 1 ; Wei, Zusheng 3 ; Bo, Weiping 1 ; Wang, We 1 ;

作者机构： 1.CATAS, ITBB, Haikou 571101, Peoples R China

2.Univ Florida, CREC, Gainesville, FL USA

3.CATAS, TCGRI, Danzhou 571737, Peoples R China

4.Hainan Univ, Haikou 571101, Peoples R China

关键词： alleles;microsatellites;expressed sequence tag: EST;simple sequence repeats: SSRs;genetic diversity;NCBI sequence database

期刊名称：PLANT MOLECULAR BIOLOGY REPORTER （ 影响因子：1.595； 五年影响因子：2.042 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Cassava (Manihot esculenta Crantz) is a very important staple and industrial crop in tropical and subtropical regions of the world. The paucity of markers is a serious limitation in marker-assisted breeding. A total of 35,992 expressed sequence tags (ESTs) from cassava, which were clustered in 13,173 unigenes, were used in this study. A total of 1,889 microsatellites were identified, with an average density of one simple sequence repeats (SSRs) every 4.40 kb. Of the 1,058 designed EST-SSRs from cultivars SC06, TMS60444, and W14, 431 were polymorphic. Then, 31 randomly selected EST-SSRs from the 431 polymorphic EST-SSRs were used to evaluate the genetic diversity of 76 cassava accessions. A total of 93 alleles were identified, and the number detected for each EST-SSR ranged from one to four. Based on the 93 alleles, the 76 cassava accessions could be classified into six groups, and the genetic similarity coefficient ranged from 0.55 to 0.94. This study demonstrated the potential of EST-derived SSRs in cassava. The resources developed in this study enriched the available molecular markers for cassava.

  • 相关文献

[1]Constructing a Genetic Linkage Map Using an F-1 Population of Non-inbred Parents in Cassava (Manihot esculenta Crantz). Chen, Xin,Xia, Zhiqiang,Fu, Yuhua,Lu, Cheng,Wang, Wenquan.

[2]Polymorphic microsatellite markers in the guava fruit fly, Bactrocera correcta (Diptera: Tephritidae). Buahom, Nopparat,Li, Zhihong,Du, Yu,Jiang, Xiaolong,Wu, Yi,Deng, Yuliang,Fu, Wei.

[3]Characterization of 31 EST-derived microsatellite markers for the pearl oyster Pinctada martensii (Dunker). Shi, Yaohua,Wang, Yan,Hou, Zhanhui,Wang, Aimin,Shi, Yaohua,Guo, Ximing,Shi, Yaohua,Hong, Kui.

[4]RAPD analysis of 33 varieties of banana. Su, J,Zhou, P,Zheng, XQ,Huang, BZ,Li, FN. 2001

[5]Studies of the genetic diversity of seven sweetsop (Annona squamosa L.) cultivars by amplified fragment length polymorphism analysis. Zhao Zhichang,Hu Guibing,Ouyang Ruo,Liu Yunchun,Zhao Zhichang,Chen Yeyuan,Luo Shirong. 2011

[6]Genetic Diversity Analysis of Pepper Inbred Lines. Liu, Ziji,Yang, Yan,Cao, Zhenmu. 2015

[7]Genetic diversity and marker-trait association analysis for agronomic traits in Aconitum carmichaelii Debeaux. Yu, Ma,Cao, Ling-Li,Shu, Xiao-Yan,Huang, Jing,Liu, Dan,Zhang, Hong,Hou, Da-Bin,Yang, Yu-Xia,Guan, Ling-Liang,Gou, Lu-Lu. 2017

[8]Genetic diversity of the Chinese traditional herb Blumea balsamifera (Asteraceae) based on AFLP markers. Pang, Y. X.,Zhang, Y. B.,Yu, J. B.,Zhu, M.,Chen, Y. Y.,Wang, W. Q.,Yuan, Y.. 2014

[9]Genetic diversity analysis among and within populations of Pogostemon cablin from China with ISSR and SRAP markers. Wu, You-Gen,Guo, Qiao-Sheng,Wu, You-Gen,Lin, You-Fen,Luo, Li-Juan,Wu, You-Gen,He, Ji-Chan,Liu, Guo-Dao. 2010

[10]Amplified Fragment Length Polymorphism Markers and Agronomic Traits Analysis Provide Strategies for Improvement of Bitter Gourd (Momordica charantia L.). Yang, Yan,Zhan, Yuanfeng,Liu, Weixia,Sun, Jihua. 2010

[11]Development of microsatellite markers in Cocos nucifera and their application in evaluating the level of genetic diversity of Cocos nucifera. Xiao, Yong,Luo, Yi,Yang, Yaodong,Fan, Haikuo,Xia, Wei,Zhao, Songlin,Qiao, Fei,Fan, Haikuo,Sager, Ross,Mason, Annaliese S.,Mason, Annaliese S.. 2013

[12]Genetic diversity and phylogenetic relationship of Tadehagi in southwest China evaluated by inter-simple sequence repeat (ISSR). He, Xin,Huang, Bizhi,Liu, Diqiu,Liu, Guodao.

[13]Genetic diversity and differentiation of the Hainan Tall coconut (Cocos nucifera L.) as revealed by inter-simple sequence repeat markers. Pan, Kun,Fan, Haikuo,Wu, Yi,Tang, Longxiang,Wang, Wenquan,Wang, Haiyan,Pan, Kun. 2018

[14]Genetic diversity in the germplasm of black pepper determined by EST-SSR markers. Wu, B. D.,Fan, R.,Hu, L. S.,Wu, H. S.,Hao, C. Y.,Wu, B. D.,Fan, R.,Hu, L. S.,Wu, H. S.,Hao, C. Y.. 2016

[15]Genetic diversity of Fusarium mangiferae isolated from mango malformation disease China. Liu, Feng,Wei, Ji-guang,Liu, Feng,Zhan, Ru-lin,Ou, Xiong-chang,Chang, Jin-mei. 2014

[16]Characterization and utilization of microsatellites in the Coffea canephora genome to assess genetic association between wild species in Kenya and cultivated coffee. Ogutu, Collins,Fang, Ting,Wang, Lu,Ma, Baiquan,Deng, Xianbao,Owiti, Albert,Han, Yuepeng,Ogutu, Collins,Owiti, Albert,Han, Yuepeng,Yan, Lin,Huang, Lifang,Wang, Xiaoyang,Ogutu, Collins,Fang, Ting,Ma, Baiquan,Owiti, Albert,Nyende, Aggrey. 2016

[17]Isolation and characterization of microsatellite markers for Axonopus compressus (Sw.) Beauv. (Poaceae) using 454 sequencing technology. Wang, X. -L.,Liao, L.,Wang, Z. -Y.,Li, Y.,Bai, C. -J.. 2015

[18]The Genetic Diversity of Hainan Black Goat by Capillary Gel Electrophoresis with Microsatellite Markers in Tropical Area of China. Zhou, H. L.,Guan, S.,Hou, G. Y.,Wang, D. J.,Xu, T. S.,Wang, D. F.,Shi, L. G.,Rong, G.,Li, M.. 2012

[19]AFLP fingerprinting analysis of elite Hevea brasiliensis germplasm. Luo, AD,Chen, SC,Wu, KX,Fu, SP. 2001

[20]Genetic Diversity in Various Accessions of Pineapple [Ananas comosus (L.) Merr.] Using ISSR and SSR Markers. He, Jun-hu,Chen, Hua-rui,Chen, Ye-yuan,Qiao, Fei,Wang, Jian-sheng. 2017

作者其他论文 更多>>
  • MePHD1.2 affects the synthesis of cyanogenic glycosides by regulating of MeCYP79D2 in cassava

    作者：Li, Mengtao;Li, Yajun;Mai, Weitao;Khan, Luqman;Wang, Wenquan;Liu, Jinping;Chen, Xin;Li, Mengtao;Li, Yajun;Mai, Weitao;Khan, Luqman;Wang, Wenquan;Liu, Jinping;Chen, Xin;Li, Mengtao;Zhao, Xiao;Li, Yajun;Li, Yuanchao;Mai, Weitao;Chen, Xin;Zhao, Xiao;Li, Yuanchao;Zhao, Xiaoye;Liang, Qibing;Yin, Qingchun;Li, Yajun;Chen, Xin

    关键词：Cyanogenic glycosides; Cytochrome P450; Manihot esculenta; MePHD1.2

  • Identification of the cassava NADP-ME gene family and its response and regulation in photosynthesis

    作者：Li, Haozheng;Xiao, Jin;Chen, Jiahui;Shen, Xu;Luo, Jia;Guo, Fengguang;Xu, Liangye;Guo, Xin;Wang, Shujuan;Wang, Wenquan;Wang, Shangfei;Wang, Haiyan

    关键词：C-3-C-4 intermediate photosynthesis; NADP-ME; cassava; C-4 evolution; coexpression network

  • Water lily pond: a multiomics database for water lilies

    作者：Zhao, Chengjun;Zhang, Ji;Chen, Yayu;Yang, Lishuang;Chen, Hongliang;Liang, Yufan;Wang, Wenquan;He, Shuang;Luo, Yunqing;Zhang, Junyu;Zhang, Hongbin;Yang, Shuting;Guo, Guilian;Dai, Wenbai;Yang, Zhijuan;Khan, Wasi Ullah;Chen, Fei;Zhao, Chengjun;Zhang, Ji;Chen, Yayu;Yang, Lishuang;Chen, Hongliang;Liang, Yufan;Wang, Wenquan;He, Shuang;Luo, Yunqing;Zhang, Junyu;Zhang, Hongbin;Yang, Shuting;Guo, Guilian;Dai, Wenbai;Khan, Wasi Ullah;Chen, Fei;Chen, Junhao;Zhou, Yuhan;Zhang, Liangsheng;Liu, Guanhua;Jiang, Yifan;Xu, Yingchun;Xue, Jia-yu;Zhu, Tianlong;Garcia-Caparros, Pedro;van de Peer, Yves;van de Peer, Yves;van de Peer, Yves;van de Peer, Yves;Chen, Chengjie

    关键词：

  • Improving gene editing of CRISPR/Cas9 using the callus-specific promoter pYCE1 in cassava (Manihot esculenta Crantz)

    作者：Li, Yuanchao;Li, Youzhi;Li, Yuanchao;Bao, Ruxue;Li, Mengtao;Yang, Haojie;Yao, Yuan;Chen, Xin;Bao, Ruxue;Li, Mengtao;Zeng, Changying;Yang, Haojie;Wang, Wenquan;Yao, Yuan;Chen, Xin;Yao, Yuan;Chen, Xin

    关键词：cassava; callus; promoter; gene editing; target

  • Beyond nitrate transport: AtNRT2.4 responds to local and systemic nitrogen signaling in Arabidopsis

    作者：Zhang, Huaifang;Li, Yanmei;Zhao, Jinling;Mai, Weitao;Khan, Luqman;Wang, Wenquan;Zeng, Changying;Chen, Xin;Zhang, Huaifang;Huang, Jinxia;Li, Yanmei;Zhao, Jinling;Mai, Weitao;Chen, Xin;Zhang, Meng

    关键词：Nitrate deficiency; Local N-deficiency signals; Systemic nitrate signals; Root architecture; Anthocyanin accumulation

  • Advancements and strategies of genetic improvement in cassava (Manihot esculenta Crantz): from conventional to genomic approaches

    作者：Xiao, Liang;Cheng, Dong;Yan, Huabing;Ou, Wenjun;Li, Kaimian;Chen, Xin;Rabbi, Ismail Yusuf;Wang, Wenquan

    关键词：

  • Pan-genome and haplotype map of cassava cultivars and wild ancestors provide insights into its adaptive evolution and domestication

    作者：Xia, Zhiqiang;Zhou, Xincheng;Jiang, Sirong;Chen, Fei;Zou, Meiling;Xu, Liangye;Guo, Xin;Wang, Shujuan;Li, Mengtao;Liu, Shisheng;Bao, Yuting;Zhang, Chenji;Xiao, Jianjia;Guo, Fengguang;Shen, Xu;Li, Haozheng;Zhang, Huaifang;He, Shuang;Wan, Yinglang;Chen, Yinhua;Huang, Dongyi;Li, Bin;Peng, Ming;Chen, Xin;Wang, Wenquan;Du, Zhenglin;Chen, Meili;Zhao, Wenming;Xiao, Jingfa;Du, Zhenglin;Chen, Meili;Zhao, Wenming;Xiao, Jingfa;Zhou, Xincheng;Wang, Haiyan;Lu, Cheng;Peng, Ming;Chen, Xin;Zhu, Tingting;Wang, Le;Luo, Ming-Cheng;Qiao, Fei;Li, Kaimian;Carvalho, Luiz;Lopez-Lavalle, Luis Augusto Becerra;Zhang, Xiaofei;Ceballos, Hernan;Wang, Zhenyu;Li, Yuanchao;Zhao, Long;Yan, Huabing;Qin, Xiaochun;Ma, Ling;Zhang, Weixiong;Moller, Birger Lindberg

    关键词：genome; pan-genome; structural variations; selective sweeping; evolution and domestication; cassava

置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：中国热带农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台