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Identification and characterization of a subset of microRNAs in wheat (Triticum aestivum L.)

文献类型： 外文期刊

作者： Su, Chun 1 ; Yang, Xiaozeng 2 ; Gao, Shiqing 1 ; Tang, Yimiao 1 ; Zhao, Changping 1 ; Li, Lei 1 ;

作者机构： 1.Beijing Acad Agr & Forestry Sci, Engn & Tech Res Ctr Hybrid Wheat, Beijing 100097, Peoples R China

2.Univ Virginia, Dept Biol, Charlottesville, VA 22904 USA

关键词： Deep sequencing;EST;MicroRNA;MiRDeep-P;Triticum aestivum;Wheat

期刊名称：GENOMICS （ 影响因子：5.736； 五年影响因子：4.939 ）

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收录情况： SCI

摘要： MicroRNAs (miRNAs) represent a class of endogenous regulator for post-transcriptionally modulating gene expression. Elucidating complete miRNA repertoires for individual species is a long-desired goal in miRNA research. So far only 42 have been annotated for common wheat (Triticum aestivum) due to its large genome. Here, we employed miRDeep-P, a program developed previously for retrieving miRNAs from deep sequencing data in plants, to parse 14 sequenced small RNA libraries of wheat using expression sequence tags (ESTs) as the reference in lieu of a complete genome sequence. This effort identified 145 miRNAs along with the corresponding stem-looped precursors with many differentially expressed in development and associated with powdery mildew infection. Examination of the phylogenetic distribution of these miRNAs and their target genes revealed that many are conserved in monocots. The set of miRNAs identified in this study is thus useful to further miRNA research in wheat and other important cereal crop species.

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