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Ovary transcriptome profiling of Coilia nasus during spawning migration stages by Illumina sequencing

文献类型： 外文期刊

作者： Duan, Jin-Rong 2 ; Zhou, Yan-Feng 2 ; Xu, Dong-Po 2 ; Zhang, Min-Ying 2 ; Liu, Kai 2 ; Shi, Ying 1 ; Wei, Qi-Wei 1 ; Fang 1 ;

作者机构： 1.CAFS, Yangtze River Fisheries Res Inst, Minist Agr, Key Lab Freshwater Biodivers Conservat, Wuhan 4302231, Peoples R China

2.Chinese Acad Fishery Sci, Freshwater Fisheries Res Ctr, Wuxi 214128, Peoples R China

3.Nanjing Agr Univ, Wuxi Fisheries Coll, Wuxi 214128, Peoples R China

关键词： Coilia nasus;Spawning migration;Ovary transcriptome;Illumina sequencing

期刊名称：MARINE GENOMICS （ 影响因子：1.71； 五年影响因子：1.969 ）

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收录情况： SCI

摘要： Coilia nasus is an anadromous kind of small to moderate size fish species, and limited transcriptomics research has been performed. In the present study, we performed Illumina sequencing to produce a 22,996,612 clean reads representing with a total of 4,599,079,601 (4.5 Gb) nucleotides comprehensive transcript dataset for ovary of C. nasus. Over 20 million total reads were assembled into 63,141 unigenes, and 27,027 annotated genes were predicted by Blastx and ESTScan, respectively. Applying Blast analysis and functional annotation (e.g., GO, COG, Swissprot and KEGG), we have sampled an extensive and diverse expressed gene catalog for C. nasus representing a large proportion of the genes expressed in the ovary development process. This approach will assist in the discovery and annotation of novel genes that play key roles in anadromous fish spawning migration process. (C) 2015 Elsevier B.V. All rights reserved.

  • 相关文献

[1]Developmental Expression of HSP60 and HSP10 in the Coilia nasus Testis during Upstream Spawning Migration. Fang, Di-An,Zhou, Yan-Feng,Zhang, Min-Ying,Xu, Dong-Po,Liu, Kai,Duan, Jin-Rong,Fang, Di-An,Xu, Dong-Po. 2017

[2]Screening potential SSR markers of the anadromous fish Coilia nasus by de novo transcriptome analysis using Illumina sequencing. Fang, D. -A.,Xu, P.,Fang, D. -A.,Zhou, Y. -F.,Duan, J. -R.,Zhang, M. -Y.,Xu, D. -P.,Liu, K.,Xu, P.,Wei, Q.. 2015

[3]Testes transcriptome profiles of the anadromous fish Coilia nasus during the onset of spermatogenesis. Zhou, Yan-Feng,Duan, Jin-Rong,Liu, Kai,Xu, Dong-Po,Zhang, Min-Ying,Fang, Di-An,Xu, Pao,Fang, Di-An,Xu, Pao.

[4]Molecular Characteristic, Protein Distribution and Potential Regulation of HSP90AA1 in the Anadromous Fish Coilia nasus. Fang, Di-An,Duan, Jin-Rong,Zhou, Yan-Feng,Zhang, Min-Ying,Xu, Dong-Po,Liu, Kai,Xu, Pao,Fang, Di-An,Xu, Dong-Po. 2016

[5]First studies of embryonic and larval development of Coilia nasus (Engraulidae) under controlled conditions. Xu, Gangchun,Tang, Xue,Gu, Ruobo,Xu, Pao,Tang, Xue,Le, Guowei,Zhang, Chengxiang,Zheng, Jinliang. 2011

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[7]Differences in muscle cellularity and flesh quality between wild and farmed Coilia nasus (Engraulidae). Tang, Xue,Xu, Gangchun,Xu, Pao,Gu, Ruobo,Tang, Xue,Dai, Hui,Zhang, Chengxiang. 2012

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