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Genome-Wide Identification and Analysis of the Type-B Authentic Response Regulator Gene Family in Peach (Prunus persica)

文献类型： 外文期刊

作者： Zeng, Jingjue 1 ; Zhu, Xudong 1 ; Haider, Muhammad S. 1 ; Wang, Xicheng 2 ; Zhang, Cheng 1 ; Wang, Chen 1 ;

作者机构： 1.Nanjing Agr Univ, Coll Hort, Nanjing, Jiangsu, Peoples R China

2.Jiangsu Acad Agr Sci, Inst Hort, Nanjing, Jiangsu, Peoples R China

关键词： Type-B authentic response regulator;Bioinformatics analysis;Gene expression analysis;Peach

期刊名称：CYTOGENETIC AND GENOME RESEARCH （ 影响因子：1.636； 五年影响因子：1.943 ）

ISSN：

年卷期：

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收录情况： SCI

摘要： The type-B authentic response regulator (ARR-B) family members serve as DNA-binding transcriptional regulators, whose activities are probably regulated by phosphorylation/dephosphorylation, resulting in the rapid induction of type-A ARR genes. Type-B ARRs are believed to be involved in many biological processes, including cytokinin signaling, plant growth, and stress responses through a chaperone or by isomerization of proline residues during protein folding. The public availability of complete peach genome sequences allows the identification of 23 ARR-B genes by HMMER and blast analysis. Scaffold locations of these genes in the peach genome were determined, and the protein domain and motif organization of peach type-B ARRs were analyzed. The phylogenetic relationships between peach type-B ARRs were also assessed. The expression profiles of peach ARR-B genes revealed that most of the type-B ARRs showed high expression levels in tissues undergoing rapid cell division and may engage more cytokinins, like half-opened flowers, fruits at expansion stages, and young leaves. These findings not only contribute to a better understanding of the complex regulation of the peach ARR-B gene family, but also provide valuable information for future research in peach functional genomics. (C) 2017 S. Karger AG, Basel

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