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The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)

文献类型： 外文期刊

作者： Liu, Fengqi 1 ; Tembrock, Luke R. 3 ; Sun, Cheng 4 ; Han, Guiqing 1 ; Guo, Changhong 1 ; Wu, Zhiqiang 3 ;

作者机构： 1.Harbin Normal Univ, Coll Life Sci & Technol, Key Lab Mol Cytogenet & Genet Breeding Heilongjia, Harbin, Peoples R China

2.Heilongjiang Acad Agr Sci, Inst Pratacultural Sci, Harbin, Peoples R China

3.Colorado State Univ, Dept Biol, Ft Collins, CO 80523 USA

4.Chinese Acad Agr Sci, Inst Apicultural Res, Key Lab Pollinating Insect Biol, Minist Agr, Beijing, Peoples R China

关键词： Next generation sequencing;Oryza brachyantha;plastid genome;rice

期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.658； 五年影响因子：0.674 ）

ISSN： 2380-2359

年卷期： 2016 年 1 卷

页码：

收录情况： SCI

摘要： The whole plastid genome of wild rice (Oryza brachyantha) is characterized in this study. The genome is 134 604 bp in length and is arranged in a typical circular structure, including a pair of inverted repeats (IRs) of 20 832 bp in size separated by a large single-copy region (LSC) of 80 411 bp in length and a small single-copy region (SSC) of 12 529 bp in length. The overall GC content of the genome is 38.98%. One hundred and ten unique genes were annotated from the chloroplast genome, including 76 protein-coding genes, 4 ribosomal RNA genes and 30 tRNA genes. A total of 20 of these genes are duplicated in the IR regions, 13 genes contain 1 intron and 2 genes (rps12 and ycf3) have 2 introns.

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