Transcriptome Analysis Reveals Molecular Underpinnings of Common Carp (Cyprinus carpio) Under Hypoxia Stress
文献类型： 外文期刊
作者： Suo, Ning 1 ; Zhou, Zhi-Xiong 1 ; Xu, Jian 2 ; Cao, Ding-Chen 3 ; Wu, Bi-Yin 2 ; Zhang, Han-Yuan 2 ; Xu, Peng 1 ; Zhao, Zi-Xia 2 ;
作者机构： 1.Xiamen Univ, Coll Ocean & Earth Sci, State Key Lab Marine Environm Sci, Xiamen, Peoples R China
2.Chinese Acad Fishery Sci, Key Lab Aquat Genom, Minist Agr & Rural Affairs, Beijing, Peoples R China
3.Chinese Acad Fishery Sci, Heilongjiang River Fisheries Res Inst, Harbin, Peoples R China
关键词： common carp; hypoxia stress; transcriptome; immune response; HIFs
期刊名称：FRONTIERS IN GENETICS （ 影响因子：4.772； 五年影响因子：4.933 ）
ISSN：
年卷期： 2022 年 13 卷
页码：
收录情况： SCI
摘要： As an essential environmental factor that affects the economic benefits of aquaculture, hypoxia is one of the urgent problems to be solved in the aquaculture fish breeding industry. Common carp (Cyprinus carpio) is a critical economic fish in China, and at present, there are many breeding strains of common carp with different character advantages in China, including Hebao red carp (C. carpio var wuyuanesis) and Songpu mirror carp (C. carpio var specularis). Even if the environmental adaptation of common carp is generally strong, the genetic background of hypoxia tolerance in different strains of common carp is unclear yet. This study tested the hypoxia tolerance of Songpu minor carp, Hebao red carp, and their hybrid F1 population by an acute hypoxia treatment. Muscle and liver tissues were used for transcriptome sequencing analysis to identify the key factors for hypoxia tolerance and explore the potential genetic mechanism for breeding high hypoxia tolerance in common carp. The comparative transcriptomic analysis revealed abundant hypoxia response-related genes and their differential regulation mechanism in these two tissues of different common carp strains under acute hypoxia, including immune response, cellular stress response, HIFs (hypoxia-inducible factors), MAP kinase, iron ion binding, and heme binding. Our findings will facilitate future investigation on the hypoxia response mechanism and provide a solid theoretical basis for breeding projects in common carp.
- 相关文献
作者其他论文 更多>>
-
Quantitative evaluation of essential amino acids and omega-3 long-chain polyunsaturated fatty acids from global marine bivalve aquaculture
作者：Tan, Karsoon;Xu, Peng;Huang, Leiheng;Luo, Cong;Choong, Khaihang;Li, Zexin;Guo, Yu;Cheong, Kit-Leong
关键词：Bivalve aquaculture; Lipid; PUFA; EPA plus DHA; Protein
-
An idea for marine ranching planning based on ocean currents and its practice in Zhongjieshan Archipelago National Marine Ranching, China
作者：Tang, Shengming;Xu, Peng;Zhang, Shouyu;Gao, Junqi;Yin, Yuqi;Yin, Yuqi;Liang, Jun;Xu, Kaida;Jiang, Yazhou;Li, Jun;Feng, Jianlong
关键词：Maring ranching planning; Coastal currents; Zhongjieshan Archipelago; Zhoushan Archipelago; Drifters
-
Effects of polystyrene nanoplastics and copper on gill tissue structure, metabolism, and immune function of the Chinese mitten crab (Eriocheir sinensis)
作者：Xu, Jian;Feng, Guangpeng;Xu, Jian;Feng, Guangpeng;Yan, Yunzhi
关键词：
Eriocheir sinensis ; nanoplastics; copper; combined toxicity; transcriptome; immunity -
Comparative analysis of genomic prediction models based on body weight trait in large yellow croaker (Larimichthys crocea)
作者：Fang, Jialu;Xu, Qinglei;Feng, Li;Hai, Jiawei;Zhou, Linyan;Xu, Jian;Fang, Jialu;Hai, Jiawei;Wang, Yabing;Peng, Shiming
关键词：Large yellow croaker; Body weight trait; Genomic selection; GBLUP; Machine learning
-
New insights into the responding mechanism of Eriocheir sinensis hepatopancreas under nanoplastics and copper stress by transcriptome analysis
作者：Xu, Jian;Feng, Guangpeng;Xu, Jian;Feng, Guangpeng;Yan, Yunzhi
关键词：Nanoplastics; Heavy metals; Accumulation; Physiology; Oxidative stress; Immune response
-
Exploring the potential regulation mechanisms of host-microbiome comprehensive interactions on growth traits in Cyprinus carpio
作者：Feng, Li;Xu, Qinglei;Li, Shangqi;Zhou, Linyan;Xu, Jian;Feng, Jianxin;Wang, Yanhui;Zhang, Qin
关键词：Common carp; Gut microbiota; Host-microbe; GWAS; Growth performance
-
Hypogonadotropic hypogonadism in male tilapia lacking a functional rln3b gene
作者：Xu, Qinglei;Zhou, Linyan;Xu, Jian;Ye, Maolin;Su, Yun;Feng, Li;Wang, Deshou
关键词：Nile tilapia; rln3b; Male fertility; HPG axis
