您好，欢迎访问黑龙江省农业科学院 机构知识库！
黑龙江省农业科学院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Transcriptome Sequencing Identified Genes and Gene Ontologies Associated with Early Freezing Tolerance in Maize

文献类型： 外文期刊

作者： Li, Zhao 1 ; Hu, Guanghui 1 ; Liu, Xiangfeng 1 ; Zhou, Yao 1 ; Li, Yu 1 ; Zhang, Xu 2 ; Yuan, Xiaohui 2 ; Zhang, Qian 1 ; Ya 1 ;

作者机构： 1.Northeast Agr Univ, Agron Coll, Harbin, Peoples R China

2.Washington State Univ, Dept Crop & Soil Sci, Pullman, WA 99164 USA

3.Heilongjiang Acad Agr Sci, Inst Maize Res, Harbin, Peoples R China

4.Chinese Acad Agr Sci, Inst Crop Sci, Beijing, Peoples R China

5.Wuhan Univ Technol, Dept Comp Sci, Wuhan, Peoples R China

关键词： freezing stress;maize;RNA-seq;DEGs;molecular mechanism

期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.753； 五年影响因子：6.612 ）

ISSN： 1664-462X

年卷期： 2016 年 7 卷

页码：

收录情况： SCI

摘要： Originating in a tropical climate, maize has faced great challenges as cultivation has expanded to the majority of the world's temperate zones. In these zones, frost and cold temperatures are major factors that prevent maize from reaching its full yield potential. Among 30 elite maize inbred lines adapted to northern China, we identified two lines of extreme, but opposite, freezing tolerance levels highly tolerant and highly sensitive. During the seedling stage of these two lines, we used RNA-seq to measure changes in maize whole genome transcriptome before and after freezing treatment. In total, 19,794 genes were expressed, of which 4550 exhibited differential expression due to either treatment (before or after freezing) or line type (tolerant or sensitive). Of the 4550 differently expressed genes, 948 exhibited differential expression due to treatment within line or lines under freezing condition. Analysis of gene ontology found that these 948 genes were significantly enriched for binding functions (DNA binding, ATP binding, and metal ion binding), protein kinase activity, and peptidase activity. Based on their enrichment, literature support, and significant levels of differential expression, 30 of these 948 genes were selected for quantitative real-time PCR (qRT-PCR) validation. The validation confirmed our RNA-Seq-based findings, with squared correlation coefficients of 80% and 50% in the tolerance and sensitive lines, respectively. This study provided valuable resources for further studies to enhance understanding of the molecular mechanisms underlying maize early freezing response and enable targeted breeding strategies for developing varieties with superior frost resistance to achieve yield potential.

  • 相关文献

[1]Biochemical and Transcriptional Regulation of Membrane Lipid Metabolism in Maize Leaves under Low Temperature. Gu, Yingnan,He, Lin,Zhao, Changjiang,Wang, Feng,Yan, Bowei,Gao, Yuqiao,Li, Zuotong,Yang, Kejun,Xu, Jingyu,Gu, Yingnan. 2017

[2]Identification of the trehalose-6-phosphate synthase gene family in winter wheat and expression analysis under conditions of freezing stress. Xie, D. W.,Wang, X. N.,Fu, L. S.,Sun, J.,Li, Z. F.,Xie, D. W.,Zheng, W..

[3]重度冷应激下民猪背最长肌应答分子调控网络分析. 马守正,汪亮,李忠秋,王文涛,刘娣,张冬杰. 2022

[4]低温胁迫下民猪骨骼肌的转录调控分析. 张冬杰,汪亮,马红,李忠秋,王文涛,刘娣. 2022

[5]RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone in vitro: significance to steroidogenesis. Zhang, Guo-Liang,Zhang, Rui-Qian,Sun, Xiao-Feng,Cheng, Shun-Feng,Wang, Yu-Feng,Ge, Wei,Zhao, Yong,Shen, Wei,Li, Lan,Zhang, Guo-Liang,Ji, Chuan-Liang,Yu, Jie,Zhang, Guo-Liang,Sun, Shi-Duo,Feng, Yan-Zhong. 2017

[6]MICROBIAL ACTIVITY AND COMMUNITY DIVERSITY IN TOBACCO RHIZOSPHERIC SOIL AFFECTED BY DIFFERENT PRE-CROPS. Li, X.,Zhang, X.,Yue, B.,Sun, G.,Li, X.,Zhang, H.,He, G.,Xu, N.,Sun, M.,Zhao, Y.. 2017

[7]New insight into the mechanism of heterofertilization during maize haploid induction. Liu, Chenxu,Chen, Baojian,Xu, Xiaowei,Li, Wei,Dong, Xin,Tian, Xiaolong,Chen, Chen,Zhong, Yu,Chen, Ming,Chen, Shaojiang,Ma, Yanhua,Dong, Xin.

[8]A comparison of different methods of decomposing maize straw in China. Kuang, Enjun,Chi, Fengqin,Su, Qingrui,Zhang, Jiuming,Jeng, Alhaji S..

[9]Large-scale comparative phosphoprotein analysis of maize seedling leaves during greening. Ning, De-Li,Ning, De-Li,Wang, Yue-Feng,Wang, Bai-Chen,Liu, Ke-Hui,Wang, Ying-Chun,Liu, Chang-Cai,Liu, Jin-Wen,Qian, Chun-Rong,Yu, Yang.

[10]Genome-wide comparative analysis of digital gene expression tag profiles during maize ear development. Liu, Hongjun,Qin, Cheng,Zhang, Yongzhong,Liu, Sisi,Shen, Yaou,Lin, Haijian,Zhang, Zhiming,Pan, Guangtang,Yang, Xuerong,Liao, Xinhui,Zhou, Huangkai,Zuo, Tao,Qin, Cheng,Cao, Shiliang,Dong, Ling,Luebberstedt, Thomas.

[11]Effect of Trait Heritability, Training Population Size and Marker Density on Genomic Prediction Accuracy Estimation in 22 bi-parental Tropical Maize Populations. Zhang, Ao,Liu, Yubo,Cui, Zhenhai,Ruan, Yanye,Yu, Haiqiu,Zhang, Ao,Wang, Hongwu,Liu, Yubo,Burgueno, Juan,San Vicente, Felix,Crossa, Jose,Zhang, Xuecai,Wang, Hongwu,Beyene, Yoseph,Semagn, Kassa,Olsen, Michael,Prasanna, Boddupalli M.,Cao, Shiliang,Semagn, Kassa. 2017

[12]Quantitative Trait Locus Analysis for Deep-Sowing Germination Ability in the Maize IBM Syn10 DH Population. Liu, Hongjun,Zhang, Lin,Zeng, Xing,Wang, Jiechen,Li, Changsheng,Xie, Shupeng,Zhang, Yongzhong,Liu, Sisi,Hu, Songlin,Lee, Michael,Lubberstedt, Thomas,Wang, Jianhua,Zhao, Guangwu. 2017

[13]Correlation Analysis of Yield and Photosynthetic Traits with Simple Repeat Sequence (SSR) Markers in Maize. Li, Weizhong,Zhao, Dongxu,Wei, Shi,Li, Jing,Li, Weizhong,Wang, Maoqing,Hu, Guohua,Liang, Chunbo. 2017

[14]Light-regulated phosphorylation of maize phosphoenolpyruvate carboxykinase plays a vital role in its activity. Chao, Qing,Mei, Ying-Chang,Gao, Zhi-Fang,Chen, Yi-Bo,Wang, Bai-Chen,Liu, Xiao-Yu,Qian, Chun-Rong,Hao, Yu-Bo. 2014

[15]Structure of Allozymatic Diversity of Ten Temperate and Adapted Exotic Breeding Populations of Maize (Zea mays L.). Zheng Da-hao,Li Yan-ru,Yu Yang,Wang Zhen-ping. 2009

[16]Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation. Liu, Hongjun,Ma, Langlang,Gao, Shibin,Lin, Haijian,Pan, Guangtang,Shen, Yaou,Liu, Hongjun,Yang, Xuerong,Zhang, Lin,Zeng, Xing,Xie, Shupeng,Peng, Huanwei,Wu, Yongrui. 2017

[17]Mycotoxin Contamination of Maize in China. Sun, Xiang Dong,Su, Ping,Shan, Hong,Sun, Xiang Dong,Su, Ping,Shan, Hong. 2017

[18]Large-scale analysis of phosphorylated proteins in maize leaf. Bi, Ying-Dong,Lu, Tian-Cong,Shen, Zhuo,Chen, Yi-Bo,Wang, Bai-Chen,Bi, Ying-Dong,Lu, Tian-Cong,Shen, Zhuo,Chen, Yi-Bo,Wang, Bai-Chen,Bi, Ying-Dong,Wang, Hong-Xia,Li, Xiao-hui.

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：黑龙江省农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台