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Transcriptome Sequencing Identified Genes and Gene Ontologies Associated with Early Freezing Tolerance in Maize

文献类型： 外文期刊

作者： Li, Zhao 1 ; Hu, Guanghui 1 ; Liu, Xiangfeng 1 ; Zhou, Yao 1 ; Li, Yu 1 ; Zhang, Xu 2 ; Yuan, Xiaohui 2 ; Zhang, Qian 1 ; Ya 1 ;

作者机构： 1.Northeast Agr Univ, Agron Coll, Harbin, Peoples R China

2.Washington State Univ, Dept Crop & Soil Sci, Pullman, WA 99164 USA

3.Heilongjiang Acad Agr Sci, Inst Maize Res, Harbin, Peoples R China

4.Chinese Acad Agr Sci, Inst Crop Sci, Beijing, Peoples R China

5.Wuhan Univ Technol, Dept Comp Sci, Wuhan, Peoples R China

关键词： freezing stress;maize;RNA-seq;DEGs;molecular mechanism

期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.753； 五年影响因子：6.612 ）

ISSN： 1664-462X

年卷期： 2016 年 7 卷

页码：

收录情况： SCI

摘要： Originating in a tropical climate, maize has faced great challenges as cultivation has expanded to the majority of the world's temperate zones. In these zones, frost and cold temperatures are major factors that prevent maize from reaching its full yield potential. Among 30 elite maize inbred lines adapted to northern China, we identified two lines of extreme, but opposite, freezing tolerance levels highly tolerant and highly sensitive. During the seedling stage of these two lines, we used RNA-seq to measure changes in maize whole genome transcriptome before and after freezing treatment. In total, 19,794 genes were expressed, of which 4550 exhibited differential expression due to either treatment (before or after freezing) or line type (tolerant or sensitive). Of the 4550 differently expressed genes, 948 exhibited differential expression due to treatment within line or lines under freezing condition. Analysis of gene ontology found that these 948 genes were significantly enriched for binding functions (DNA binding, ATP binding, and metal ion binding), protein kinase activity, and peptidase activity. Based on their enrichment, literature support, and significant levels of differential expression, 30 of these 948 genes were selected for quantitative real-time PCR (qRT-PCR) validation. The validation confirmed our RNA-Seq-based findings, with squared correlation coefficients of 80% and 50% in the tolerance and sensitive lines, respectively. This study provided valuable resources for further studies to enhance understanding of the molecular mechanisms underlying maize early freezing response and enable targeted breeding strategies for developing varieties with superior frost resistance to achieve yield potential.

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