Chromosomal-level genome of a sheet-web spider provides insight into the composition and evolution of venom
文献类型： 外文期刊
作者： Zhu, Bingyue 1 ; Jin, Pengyu 1 ; Hou, Zhonge 1 ; Li, Jianlong 3 ; Wei, Shujun 4 ; Li, Shuqiang 1 ;
作者机构： 1.Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
3.Guangdong Acad Agr Sci, Guangdong Prov Key Lab Tea Plant Resources Innova, Tea Res Inst, Guangzhou, Peoples R China
4.Beijing Acad Agr & Forestry Sci, Inst Plant & Environm Protect, Beijing, Peoples R China
关键词： Araneae; comparative genomics; evolutionary rates; proteome; toxin gene; transcriptome
期刊名称：MOLECULAR ECOLOGY RESOURCES （ 影响因子：8.678； 五年影响因子：8.984 ）
ISSN： 1755-098X
年卷期： 2022 年 22 卷 6 期
页码：
收录情况： SCI
摘要： Spiders are the most abundant venomous predators in the world. Previous research related to spider venom has mostly relied on transcriptomes and proteomes, with only a few high-quality genomes available. This is far from consistent with the species diversity of spiders. In this study, we constructed a high-quality chromosome-level genome assembly of Hylyphantes graminicola, which contained 13 chromosomes, with a genome length of 931.68 Mb and scaffold N50 of 77.07 Mb. Integrating genome, transcriptome, and proteome profiling, we identified a total of 59 coding genes among nine toxin gene families. Among them, Group 7 allergen (ALL7) protein was reported in spider venom for the first time. Its coding genes had a predicted signal peptide and maintained high expression levels in the venom, suggesting that ALL7 plays an important role in venom and maybe is a type of newly discovered venom toxin in the spider. By implementing comparative genomics, we found a similar gene number of main toxin gene families in spiders and the scorpion genome with conservative evolutionary rates, indicating that these toxin genes could be an ancient (similar to 400 million years) and a conserved "basic toolkit" for spiders and scorpions to perform primary defence functions. Obtaining high-quality chromosome-level genomes from spiders not only facilitates venom research and toxin resource application, but also can improve comparative genomic analysis in other important traits, like the evolution of silk or behaviour.
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