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Genome-wide association study reveals the genetic basis of amino acids contents variations in Peanut (Arachis hypogaea L.)

文献类型： 外文期刊

作者： Umer, Muhammad J. 1 ; Lu, Qing 1 ; Huang, Lu 1 ; Batool, Raufa 2 ; Liu, Hao 1 ; Li, Haifen 1 ; Wang, Runfeng 1 ; Qianxia, Yu 1 ; Varshney, Rajeev K. 3 ; Pandey, Manish K. 4 ; Hong, Yanbin 1 ; Chen, Xiaoping 1 ;

作者机构： 1.Guangdong Acad Agr Sci, Crops Res Inst, South China Peanut Sub Ctr Natl Ctr Oilseed Crops, Guangdong Prov Key Lab Crop Genet Improvement, Guangzhou, Peoples R China

2.Guangdong Acad Agr Sci, Key Lab Green Prevent & Control Fruits & Vegetable, Guangdong Prov Key Lab High Technol Plant Protect, Inst Plant Protect,Minist Agr & Rural Affairs, Guangzhou, Peoples R China

3.Murdoch Univ, Food Futures Inst, WA State Agr Biotechnol Ctr, Ctr Crop & Food Innovat, Murdoch, WA, Australia

4.Int Crops Res Inst Semi Arid Trop, Hyderabad, India

期刊名称：PHYSIOLOGIA PLANTARUM （ 影响因子：3.6； 五年影响因子：5.4 ）

ISSN： 0031-9317

年卷期： 2024 年 176 卷 5 期

页码：

收录情况： SCI

摘要： Peanut is a significant source of protein for human consumption. One of the primary objectives in peanut breeding is the development of new cultivars with enhanced nutritional values. To further this goal, a genome-wide association study (GWAS) was conducted to analyze seed amino acids contents in 390 diverse peanut accessions collected worldwide, mainly from China, India, and the United States, in 2017 and 2018. These accessions were assessed for their content of 10 different amino acids. Variations in amino acids contents were observed, and arginine (Arg) was found to have the highest average value among all the amino acids quantified. The geographical distribution of the accessions also revealed variations in amino acids contents. High and positive correlation coefficients were observed among the amino acids, suggesting linked metabolic pathways or genetic regulation. A total of 88 single nucleotide polymorphisms (SNPs) spanning various chromosomes were identified, each associated with different amino acids. By using a combination of GWAS, expression anlaysis, and genomic polymorphisim comparisions, the Ahy_A09g041582 (LAC15) gene located on chromrosome A09 was identified as the key candidate which might be involved in plant growth and regulation and may alter amino acids levels. Expression analysis indicated that Ahy_A09g041582 has higher expressions in the shells and seeds than other genes located in the candidate region. This study may help with marker-based breeding of peanuts with higher nutritional value and offers fresh insights into the genetic basis of the amino acids contents of peanuts.

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