Development and characterization of 33 SNP markers in a critically endangered Hynobius amjiensis using ddRAD sequencing
文献类型： 外文期刊
作者： Kan, Xia 1 ; Wang, Guoliang 2 ; Zhang, Lili 2 ; Zhao, Xin 2 ; Shan, Shuangshuang 1 ; Liu, Guiming 2 ; Shao, Chen 1 ; Wang 1 ;
作者机构： 1.Zhejiang Normal Univ, Coll Chem & Life Sci, Jinhua 321000, Zhejiang, Peoples R China
2.Beijing Acad Agr & Forestry Sci, Beijing Agrobiotechnol Res Ctr, Beijing Key Lab Agr Genet Resources & Biotechnol, Beijing 100097, Peoples R China
关键词： Hynobius amjiensis; Single nucleotide polymorphism; Double digest restriction-site associated DNA sequencing; Genetic diversity assessment
期刊名称：CONSERVATION GENETICS RESOURCES （ 影响因子：0.973； 五年影响因子：0.946 ）
ISSN： 1877-7252
年卷期： 2021 年 13 卷 4 期
页码：
收录情况： SCI
摘要： Hynobius amjiensis was considered as one of the 29 most threatened amphibian in China. To effectively conserve, manage and recover the population of this critically endangered species, 33 single nucleotide polymorphism (SNP) markers were developed using double digest restriction-site associated DNA (ddRAD) sequencing. The minor allele frequency per locus ranged from 0.0161 to 0.5000. The observed heterozygosity and expected heterozygosity varied from 0.0323 to 0.6667 (average 0.3303) and from 0.0317 to 0.5000 (average 0.2772), respectively. The inbreeding coefficient value ranged between - 0.3315 and 0.0000. No significant deviation from Hardy-Weinberg equilibrium (P > 0.05) were found in all loci. These novel SNPs will be helpful for the population genetic assessment and conservation of H. amjiensis.
- 相关文献
作者其他论文 更多>>
-
Risk assessment of Bacillus cereus in lettuce grown in open-field and greenhouse farming systems in China: A comparative study
作者：Qu, Yang;Zhou, Changyan;Suo, Yujuan;Yu, Shenghao;Gu, Haotian;Wang, Wen;Wang, Wenbo;He, Zhaoying;Shan, Hong;Gao, Min;Zhao, Xin;Wei, Chao;Tao, Tingting;Zhao, Guanghua
关键词：Diarrheal syndrome food poisoning; ready-to-eat vegetable; greenhouse; microbial risk assessment
-
Assembly and comparative analysis of the first complete mitochondrial genome of Setaria italica
作者：Zhang, Jiewei;Liu, Guiming;Wei, Jianhua
关键词：Comparative genomics; Foxtail millet; Mitochondrial genome; Phylogeny; Setaria italica
-
The MpNAC72/MpERF105-MpMYB10b module regulates anthocyanin biosynthesis in Malus 'Profusion' leaves infected with Gymnosporangium yamadae
作者：Wang, Yu;An, Hong;Yang, Yue;Yi, Cheng;Duan, Ying;Wang, Qian;Guo, Yannan;Yao, Lina;Chen, Mingkun;Wei, Jun;Hu, Chenyang;Li, Houhua;Meng, Jiaxin
关键词：M. 'Profusion'; anthocyanin; G. yamadae; rust; ethylene
-
Transcriptome Analysis and Metabolic Profiling Reveal the Key Regulatory Pathways in Drought Stress Responses and Recovery in Tomatoes
作者：Shu, Jinshuai;Wang, Xiaoxuan;Liu, Fuzhong;Zhang, Ying;Chen, Yuhui;Zhang, Lili;Liu, Guiming
关键词：transcriptomics; metabolomics; drought stress; rehydration; genes; pathway
-
Changes of atrazine dissipation and microbial community under coexistence of graphene oxide in river water
作者：Wang, Qinghai;Peng, Lei;Wang, Peixin;Zhou, Zixin;Li, Cui;Peng, Lei;Zhou, Zixin;Chen, Chuansheng;Wang, Yu
关键词：Pesticide pollution; Graphene oxide; Microbial diversity; Atrazine fate; Aquatic ecosystems
-
Inundative release of Trichogramma dendrolimi at different developmental stages enhances the control efficacy over Ostrinia furnacalis
作者：Wang, Yu;Iqbal, Asim;Zang, Lian-Sheng;Wang, Su;Wang, Yu;Hou, Yang-Yang;Wang, Yu;Monticelli, Lucie S.;Desneux, Nicolas
关键词：Trichogramma ostriniae; Asian corn borer; Release strategy; Dispersal; Biological control
-
Promoted dissipation and detoxification of atrazine by graphene oxide coexisting in water
作者：Wang, Qinghai;Peng, Lei;Zhou, Zixin;Li, Cui;Peng, Lei;Zhou, Zixin;Chen, Chuansheng;Wang, Yu;Que, Xiaoe
关键词：Atrazine; Graphene oxide; Combined pollution; Herbicide persistence; Herbicide transformation
