文献类型： 外文期刊
作者： Cao, You-Long 1 ; Chen, You-Yi 3 ; Li, Yan-Long 1 ; Li, Chung-, I 4 ; Lin, Shao-Ting 5 ; Lee, Bing-Ru 7 ; Hsieh, Chun-Lin 7 ; Hsiao, Yu-Yun 8 ; Fan, Yun-Fang 1 ; Luo, Qing 1 ; Zhao, Jian-Hua 1 ; Yin, Yue 1 ; An, Wei 1 ; Shi, Zhi-Gang 1 ; Chow, Chi-Nga 9 ; Chang, Wen-Chi 9 ; Huang, Chun-Lin 10 ; Chang, Wei-Hung 11 ; Liu, Zhong-Jian 13 ; Wu, Wei-Sheng 7 ; Tsai, Wen-Chieh 5 ;
作者机构： 1.Ningxia Acad Agr & Forestry Sci, Natl Wolfberry Engn Res Ctr, Yinchuan, Peoples R China
2.Ningxia Acad Agr & Forestry Sci, Inst Wolfberry Engn Technol, Yinchuan, Peoples R China
3.Natl Chiayi Univ, Dept Agron, Chiayi, Taiwan
4.Natl Cheng Kung Univ, Dept Stat, Tainan, Taiwan
5.Natl Cheng Kung Univ, Grad Program Translat Agr Sci, Tainan, Taiwan
6.Acad Sinica, Tainan, Taiwan
7.Natl Cheng Kung Univ, Dept Elect Engn, Tainan, Taiwan
8.Natl Cheng Kung Univ, Orchid Res & Dev Ctr, Tainan, Taiwan
9.Natl Cheng Kung Univ, Inst Trop Plant Sci & Microbiol, Tainan, Taiwan
10.Natl Museum Nat Sci, Dept Biol, Taichung, Taiwan
11.Natl Cheng Kung Univ Hosp, Natl Cheng Kung Univ, Dept Psychiat, Coll Med, Tainan, Taiwan
12.Natl Cheng Kung Univ Hosp, Dept Psychiat, Touliu 70428, Taiwan
13.Fujian Agr & Forestry Univ, Coll Landscape Architecture, Key Lab Natl Forestry Grassland Adm Orchid Conserv, Fuzhou, Fujian, Peoples R China
14.Fujian Agr & Forestry Univ, Int Orchid Res Ctr, Coll Landscape Architecture, Fuzhou, Fujian, Peoples R China
15.Zhejiang Acad Agr Sci, Zhejiang Inst Subtrop Crops, Wenzhou, Peoples R China
16.Shandong Acad Agr Sci, Inst Vegetables & Flowers, Jinan, Peoples R China
17.Natl Cheng Kung Univ, Dept Life Sci, Tainan, Taiwan
18.Natl Cheng Kung Univ, Univ Ctr Biosci & Biotechnol, Tainan, Taiwan
关键词： wolfberry; Lycium barbarum; wolfberry genome database (WGDB); user-friendly; genomics; transcriptomics
期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.6； 五年影响因子：6.8 ）
ISSN： 1664-462X
年卷期： 2024 年 15 卷
页码：
收录情况： SCI
摘要： Wolfberry, also known as goji berry or Lycium barbarum, is a highly valued fruit with significant health benefits and nutritional value. For more efficient and comprehensive usage of published L. barbarum genomic data, we established the Wolfberry database. The utility of the Wolfberry Genome Database (WGDB) is highlighted through the Genome browser, which enables the user to explore the L. barbarum genome, browse specific chromosomes, and access gene sequences. Gene annotation features provide comprehensive information about gene functions, locations, expression profiles, pathway involvement, protein domains, and regulatory transcription factors. The transcriptome feature allows the user to explore gene expression patterns using transcripts per kilobase million (TPM) and fragments per kilobase per million mapped reads (FPKM) metrics. The Metabolism pathway page provides insights into metabolic pathways and the involvement of the selected genes. In addition to the database content, we also introduce six analysis tools developed for the WGDB. These tools offer functionalities for gene function prediction, nucleotide and amino acid BLAST analysis, protein domain analysis, GO annotation, and gene expression pattern analysis. The WGDB is freely accessible at https://cosbi7.ee.ncku.edu.tw/Wolfberry/. Overall, WGDB serves as a valuable resource for researchers interested in the genomics and transcriptomics of L. barbarum. Its user-friendly web interface and comprehensive data facilitate the exploration of gene functions, regulatory mechanisms, and metabolic pathways, ultimately contributing to a deeper understanding of wolfberry and its potential applications in agronomy and nutrition.
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