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Characterization and Comparative Analysis of the Complete Plastomes of Five Epidendrum (Epidendreae, Orchidaceae) Species

文献类型： 外文期刊

作者： Zhao, Zhuang 1 ; Zeng, Meng-Yao 1 ; Wu, Yu-Wei 1 ; Li, Jin-Wei 1 ; Zhou, Zhuang 1 ; Liu, Zhong-Jian 1 ; Li, Ming-He 1 ;

作者机构： 1.Fujian Agr & Forestry Univ, Coll Landscape Architecture & Art, Key Lab Natl Forestry & Grassland Adm Orchid Conse, Fuzhou 350002, Peoples R China

2.Zhejiang Acad Agr Sci, Zhejiang Inst Subtrop Crops, Wenzhou 325005, Peoples R China

3.Fujian Agr & Forestry Univ, Fujian Coll & Univ Engn Res Inst Conservat & Utili, Fuzhou 350002, Peoples R China

关键词： Epidendrum; plastid genome; mutational hotspots; phylogenetic analysis

期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.6； 五年影响因子：6.2 ）

ISSN： 1661-6596

年卷期： 2023 年 24 卷 19 期

页码：

收录情况： SCI

摘要： Epidendrum, one of the three largest genera of Orchidaceae, exhibits significant horticultural and ornamental value and serves as an important research model in conservation, ecology, and evolutionary biology. Given the ambiguous identification of germplasm and complex evolutionary relationships within the genus, the complete plastome of this genus (including five species) were firstly sequenced and assembled to explore their characterizations. The plastomes exhibited a typical quadripartite structure. The lengths of the plastomes ranged from 147,902 bp to 150,986 bp, with a GC content of 37.16% to 37.33%. Gene annotation revealed the presence of 78-82 protein-coding genes, 38 tRNAs, and 8 rRNAs. A total of 25-38 long repeats and 130-149 SSRs were detected. Analysis of relative synonymous codon usage (RSCU) indicated that leucine (Leu) was the most and cysteine (Cys) was the least. The consistent and robust phylogenetic relationships of Epidendrum and its closely related taxa were established using a total of 43 plastid genomes from the tribe Epidendreae. The genus Epidendrum was supported as a monophyletic group and as a sister to Cattleya. Meanwhile, four mutational hotspots (trnC(GCA)-petN, trnD(GUC)-trnY(GUA), trnS(GCU)-trnG(UCC), and rpl32-trnL(UAG)) were identified for further phylogenetic studies. Our analysis demonstrates the promising utility of plastomes in inferring the phylogenetic relationships of Epidendrum.

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