Comparative transcriptome analysis reveals the sexual dimorphic expression profiles of mRNAs and non-coding RNAs in the Asian yellow pond turtle (Meauremys mutica)
文献类型： 外文期刊
作者： Liu, Xiaoli 1 ; Zhu, Yanyu 1 ; Wang, Yakun 1 ; Li, Wei 1 ; Hong, Xiaoyou 1 ; Zhu, Xinping 1 ; Xu, Hongyan 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Pearl River Fisheries Res Inst, Minist Agr, Key Lab Trop & Subtrop Fishery Resource Applicat, Guangzhou 510380, Peoples R China
2.ShanghaiOcean Univ, Natl Demonstrat Ctr Expt Fisheries Sci Educ, Shanghai 201306, Peoples R China
关键词： Transcriptome profile; Noncoding RNAs; mRNAs; Sexually dimorphic expression; Sex differentiation; Mauremys mutica
期刊名称：GENE （ 影响因子：3.688； 五年影响因子：3.329 ）
ISSN： 0378-1119
年卷期： 2020 年 750 卷
页码：
收录情况： SCI
摘要： Noncoding RNAs (ncRNAs), including long ncRNAs (lncRNAs), circular RNAs (circRNAs) and microRNAs (miRNAs) have been extensively studied in biological processes such as disease development, cell proliferation but remained unclear in sex differentiation in organisms. In this study, the transcriptome profiles were comparatively analyzed between male and female gonads in Mauremys mutica. A total of 8237 differentially expressed genes (DEGs), 9573 DE lncRNAs, 84 DE circRNAs and 665 DE miRNAs were identified between male and female gonads. Through gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) of the DE RNAs, it was revealed that the DE mRNAs were majorly involved in GO terms, such as 'reproduction', 'reproductive process' and the pathways of 'focal adhesion' and 'oocyte meiosis'. In addition, a co-expression network showed that the expression of gametogenesis and sex differentiation related genes, including dmrt3a, tdrd7, sox14, etc were closely associated with the levels of their corresponding ncRNAs. Intriguingly, the dmrt1 circRNA and its target mRNA were detected upregulated both in adult testis and male producing temperature (MPT) embryos. Our findings demonstrated the sexually dimorphic expression profiles of mRNAs and ncRNAs in turtle gonads, which will provide the index to find out the molecular mechanisms behind the sex differentiation in turtles, even in other environmental sex determination (ESD) species.
- 相关文献
作者其他论文 更多>>
-
Enhanced virulence of Acinetobacter johnsonii at low temperatures induces acute immune response and systemic infection in American bullfrogs (Aquarana catesbeiana)
作者：Lin, Han;Sun, Jingyang;Li, Hua;Chen, Kesong;Qin, Zhendong;Jiang, Biao;Li, Wei;Su, Youlu;Lin, Li;Liu, Chun;Wang, Qing;Wang, Qing
关键词：Cold stress; Virulence genes; Amphibian disease; Immune response; Systemic infection
-
Effects of different feeding strategies for the frozen Antarctic krill meal on growth, muscle nutrition, digestive enzyme activity, immunity, molting, and gut microbiota structure of Cherax quadricarinatus
作者：Mai, Zhuang;Liu, Fubai;Yang, Tianyan;Mai, Zhuang;Wei, Jie;Wang, Yakun;Liu, Fubai;Li, Huarong;Su, Qiyao;Hong, Kunhao;Zhou, Qiaoyan;Jiao, Tianhui;Yu, Lingyun;Zeng, Zhongqiang;Li, Huarong;Su, Qiyao;Hong, Kunhao;Jiao, Tianhui
关键词：Antarctic krill meal; Cherax quadracarinatus; growth performance; fatty acid; immunity-related gene
-
Genetic Diversity and Population Structure of the Chinese Three-Keeled Pond Turtle (Mauremys reevesii)
作者：Zhou, Chenyao;Zhu, Xinping;Zhao, Bo;Zhou, Chenyao;Xu, Haoyang;Liu, Haiyang;Li, Jipeng;Li, Wei;Hong, Xiaoyou;Chen, Chen;Ji, Liqin;Zhu, Xinping;Liu, Xiaoli;Xu, Haoyang;Li, Jipeng;Li, Wei;Zhu, Xinping;Liu, Xiaoli
关键词：
Mauremys reevesii ; population genomics; population structure; whole-genome resequencing -
Role of myostatin promoter mutations in growth and molting regulation of Macrobrachium rosenbergii
作者：Su, Qiyao;Wei, Jie;Wang, Yakun;Liufu, Bai;Li, Huarong;Mai, Zhuang;Hong, Kunhao;Zhou, Qiaoyan;Jiao, Tianhui;Mu, Xidong;Yu, Lingyun;Su, Qiyao;Li, Huarong;Hong, Kunhao;Jiao, Tianhui;Liufu, Bai;Mai, Zhuang
关键词：
Macrobrachium rosenbergii ;myostatin ; RNAi; molt; growth -
A chromosome-level reference genome assembly of the Small snakehead (Channa asiatica)
作者：Liu, Haiyang;Liu, Jiafeng;Cui, Tongxin;Zhang, Jin;Luo, Qing;Fei, Shuzhan;Chen, Kunci;Zhu, Xinping;Ou, Mi;Zhao, Jian;Liu, Haiyang;Liu, Jiafeng;Zhang, Jin;Cui, Tongxin
关键词：
-
Frog virus 3: Prevalence survey and quantitative analysis in American bullfrogs using TaqMan MGB probe real-time fluorescence quantitative PCR
作者：Li, Hua;Liu, Xiaobing;Sun, Jingyang;Lin, Han;Chen, Kesong;Hu, Yueming;Jiang, Mengzhen;Jiang, Biao;Li, Wei;Su, Youlu;Liu, Chun;Wang, Qing;Wang, Qing
关键词：Aquarana catesbeiana; Frog virus 3; TaqMan-MGB real-time PCR; Virus load; Prevalence survey
-
17α-Methyltestosterone Affected Growth, Gonadal Development, and Intestinal Microbial Analysis in the Giant Freshwater Prawn (Macrobrachium rosenbergii)
作者：Bai, Liufu;Han, Zhiqiang;Bai, Liufu;Su, Qiyao;Hong, Kunhao;Wei, Jie;Wang, Yakun;Yu, Lingyun
关键词：17 alpha-methyltestosterone;
Macrobrachium rosenbergii ; gonadal development; histological analysis; sex ratio; intestinal flora
