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Bioinformatic prediction of selenoprotein genes in the dolphin genome

文献类型： 外文期刊

作者： Chen Hua 1 ; Jiang Liang 2 ; Ni JiaZuan 1 ; Liu Qiong 1 ; Zhang JiHong 3 ;

作者机构： 1.Shenzhen Univ, Coll Life Sci, Shenzhen 518060, Peoples R China

2.Shenzhen Univ, Coll Optoelect Engn, Shenzhen 518060, Peoples R China

3.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Qingdao 266071, Peoples R China

关键词： selenium;selenoprotein;selenocystein;dophin;genome;gene prediction

期刊名称：CHINESE SCIENCE BULLETIN （ 影响因子：1.649； 五年影响因子：1.738 ）

ISSN： 1001-6538

年卷期： 2012 年 57 卷 13 期

页码：

收录情况： SCI

摘要： Selenium (Se), an essential trace element in vivo, is present mainly as selenocystein (Sec) in various selenoproteins. The Sec residue is translated from an in-frame TGA codon, which traditionally functions as a stop codon. Prediction of selenoprotein genes is difficult due to the lack of an effective method for distinguishing the dual function of the TGA codon in the open reading frame of a selenoprotein gene. In this article a eukaryotic bioinformatic prediction system that we have developed was used to predict selenoprotein genes from the genome of the common bottlenose dolphin, Tursiops truncatus. Sixteen selenoprotein genes were predicted, including selenoprotein P and glutathione peroxidase. In particular, a type II iodothyronine deiodinase was found to have two Sec residues, while the type I iodothyronine deiodinase gene has two alternative splice forms. These results provide important information for the investigation of the relationship between a variety of selenoproteins and the evolution of the marine-living dolphin.

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