Comparative transcriptomics reveals unique pine wood decay strategies in the Sparassis latifolia
文献类型： 外文期刊
作者： Yang, Chi 1 ; Ma, Lu 1 ; Xiao, Donglai 1 ; Liu, Xiaoyu 1 ; Jiang, Xiaoling 1 ; Lin, Yanquan 1 ;
作者机构： 1.Fujian Acad Agr Sci, Inst Edible Mushroom, Fuzhou 350014, Peoples R China
2.Fujian Acad Agr Sci, Natl & Local Joint Engn Res Ctr Breeding & Cultiv, Fuzhou 350014, Peoples R China
期刊名称：SCIENTIFIC REPORTS （ 影响因子：4.996； 五年影响因子：5.516 ）
ISSN： 2045-2322
年卷期： 2022 年 12 卷 1 期
页码：
收录情况： SCI
摘要： Sparassis latifolia is a valuable edible mushroom, growing on fresh pine wood sawdust substrate. However, the mechanistic bases are poorly understood. The gene expression profiles of S. latifolia were analyzed from submerged cultures with fresh pine wood sawdust substrate for different time (0 h, 1 h, 6 h, 1 day, 5 days, and 10 days, respectively). The total number of differentially expressed genes (DEGs) identified under pine sawdust inducing was 2,659 compared to 0 h (CK). And 1,073, 520, 385, 424, and 257 DEGs were identified at the five time points, respectively. There were 34 genes in common at all inoculated time points, including FAD/NAD(P)-binding domain-containing protein, glucose methanol choline (GMC) oxidoreductase, flavin-containing monooxygenase, and taurine catabolism dioxygenase. Weighted gene co-expression analysis (WGCNA) was then used to compare the molecular characteristics among the groups and identified that the blue module had the highest correlation with the time induced by pine wood sawdust. There were 102 DEGs out of 125 genes in the blue model, which were most enriched in nitronate monooxygenase activity, dioxygenase activity, and oxidation-reduction process GO terms (p < 0.05), and peroxisome in KEGG pathway. This may provide clues into mechanisms that S. latifolia can grow on fresh pine wood sawdust substrate.
- 相关文献
作者其他论文 更多>>
-
Linking life table and consumption rate of the fall armyworm, Spodoptera frugiperda reared on different maize cultivars
作者：Lu, Junjiao;Zhuang, Mengmeng;Long, Jiamin;Jiang, Xiaoling;Zhang, Yunxi;Ren, Meifeng;Li, Daqi;Zhang, Biao;Wu, Yupeng;Li, Guoping;Chi, Hsin;Chi, Hsin;Chi, Hsin
关键词：age-stage; two-sex life table; leaf consumption rate; computer simulation; economic threshold; fall armyworm
-
Long non-coding RNAs and their potential function in response to postharvest senescence of Sparassis latifolia during cold storage
作者：Weng, Mengting;Zhang, Di;Wang, Hongyu;Yang, Chi;Lin, Hongyi;Lin, Yanquan;Weng, Mengting;Zhang, Di;Wang, Hongyu;Yang, Chi;Lin, Hongyi;Lin, Yanquan;Pan, Yanfang
关键词：
-
Chromosome-Scale Genome Assembly Provides Insights into Fresh Pine Wood Decay Strategies of the Wolfiporia hoelen
作者：Yang, Chi;Xiao, Donglai;Jiang, Xiaoling;Li, Yaru;Liu, Xiaoyu;Lin, Hui;Ma, Lu;Liu, Chuansen
关键词：Wolfiporia hoelen; genome; chromosome; pine sawdust decay; comparative genomics
-
SWD1 epigenetically chords fungal morphogenesis, aflatoxin biosynthesis, metabolism, and virulence of Aspergillus flavus
作者：Pan, Xiaohua;Hao, Ling;Yang, Chi;Lin, Hong;Wu, Dandan;Chen, Xuan;Zhang, Mengjuan;Ma, Dongmei;Wang, Yu;Fu, Wangzhuo;Yao, Yanfang;Wang, Shihua;Zhuang, Zhenhong;Pan, Xiaohua;Hao, Ling;Yang, Chi;Lin, Hong;Wu, Dandan;Chen, Xuan;Zhang, Mengjuan;Ma, Dongmei;Wang, Yu;Fu, Wangzhuo;Yao, Yanfang;Wang, Shihua;Zhuang, Zhenhong;Pan, Xiaohua;Yang, Chi;Ma, Dongmei
关键词：SWD1; Aspergillus flavus; Aflatoxins; Histone methylation; Metabolomics
-
Chromosome-level assembly of Dictyophora rubrovolvata genome using third-generation DNA sequencing and Hi-C analysis
作者：Ma, Lu;Yang, Chi;Xiao, Donglai;Liu, Xiaoyu;Jiang, Xiaoling;Lin, Hui;Ying, Zhenghe;Lin, Yanquan;Ma, Lu;Yang, Chi;Xiao, Donglai;Liu, Xiaoyu;Jiang, Xiaoling;Lin, Hui;Ying, Zhenghe;Lin, Yanquan;Lin, Yanquan
关键词：Dictyophora rubrovolvata; whole-genome sequencing; functional annotation; lignocellulose degradation; CAZymes
-
Analysis and modification of central carbon metabolism in Hypsizygus marmoreus for improving mycelial growth performance and fruiting body yield
作者：Lin, Hui;Li, Pengfei;Sun, Shujing;Hu, Kaihui;Zhang, Liaoyuan;Lin, Hui;Ma, Lu;Lai, Shufang
关键词：Hypsizygus marmoreus; harvest period; central carbon metabolism (CCM); pentose phosphate pathway (PPP); glucose-6-phosphate dehydrogenase (G6PDH)
-
Role of RNA Modifications, Especially m6A, in Aflatoxin Biosynthesis of Aspergillus flavus
作者：Yang, Chi;Wu, Dandan;Lin, Hong;Ma, Dongmei;Fu, Wangzhuo;Yao, Yanfang;Pan, Xiaohua;Wang, Shihua;Zhuang, Zhenhong;Yang, Chi;Wu, Dandan;Ma, Dongmei;Fu, Wangzhuo;Yao, Yanfang;Pan, Xiaohua;Wang, Shihua;Zhuang, Zhenhong;Yang, Chi;Ma, Dongmei
关键词：Aspergillus flavus; RNAmodifications; m6A; temperature; aflatoxin; aflQ
