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Combined virome analysis and metagenomic sequencing to reveal the viral communities and risk of virus-associated antibiotic resistance genes during composting

文献类型: 外文期刊

作者: Yue, Zhengfu 1 ; Zhang, Jing 2 ; Zhang, Jing 2 ; Wang, Xingxiang 4 ; Li, Lirong 4 ; Yu, Haiyang 5 ; Liu, Beibei 1 ; Li, Qinfen 1 ; Zhu, Dong 5 ; Zou, Yukun 1 ;

作者机构: 1.Chinese Acad Trop Agr Sci, Environm & Plant Protect Inst, Key Lab Low carbon Green Agr Trop Reg China, Hainan Key Lab Trop Ecocircular Agr,Minist Agr & R, Haikou 571101, Peoples R China

2.Hainan Univ, Sanya Nanfan Res Inst, Sch Plant Protect, Key Lab Green Prevent & Control Trop Dis & Pests, Haikou 570228, Peoples R China

3.Hainan Med Univ, Sch Trop & Lab Med, Dept Environm Sci, Haikou 571199, Peoples R China

4.Chinese Acad Sci, Inst Soil Sci, CAS Key Lab Soil Environm & Pollut Remediat, Nanjing 210008, Peoples R China

5.Chinese Acad Sci, Inst Urban Environm, Key Lab Urban Environm & Hlth, Ningbo Observat & Res Stn, Xiamen 361021, Peoples R China

6.Chinese Acad Trop Agr Sci, Hainan Danzhou Trop Agroecosystem Natl Observat &, Danzhou 571737, Peoples R China

7.Chinese Acad Trop Agr Sci, Environm & Plant Protect Inst, Haikou 571101, Peoples R China

关键词: Antibiotic resistance gene; Composting; Health risk; Non-thermophilic; Virus

期刊名称:JOURNAL OF HAZARDOUS MATERIALS ( 影响因子:13.6; 五年影响因子:12.7 )

ISSN: 0304-3894

年卷期: 2023 年 459 卷

页码:

收录情况: SCI

摘要: The issue of antibiotic resistance genes (ARGs) pollution in manure has garnered significant attention, with viruses now being recognized as crucial carriers and disseminators of ARGs. However, the virus-associated ARG profiles and potential health risks in composts are still unclear. In this study, the viral communities and associated ARGs in biogas residue and pig faeces composts were profiled by virome analysis. The viral communities were dominated by Caudovirales, and non-thermophilic viruses were inactivated during composting. The diversity and abundance of ARGs were lower in virome than in metagenome, while ARGs' risk was greater in virome than in metagenome. There were six bacterial genera identified as viral hosts at the genomic level, Pseudomonas and Clostridium carried high-risk ARGs. Virus-associated ARGs in viral hosts had a higher risk rank than non-virus-associated ARGs. Composting reduced the diversity, abundance and risk of viral ARGs. The risk of ARGs in biogas residues was significantly lower than that of pig faeces in the initial period of composting, and the two different substracts equally less harmful after composting. These results revealed that viruses play a non negligible role in spreading ARGs, posing high risk to environmental and human health.

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