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Large-scale DNA barcoding of the subfamily Culterinae (Cypriniformes: Xenocyprididae) in East Asia unveils a geographical scale effect, taxonomic warnings and cryptic diversity

文献类型： 外文期刊

作者： Chen, Weitao 1 ; Hubert, Nicolas 4 ; Li, Yuefei 1 ; Xiang, Denggao 1 ; Cai, Xingwei 5 ; Zhu, Shuli 1 ; Yang, Jiping 1 ; Zhou, Chuanjiang 6 ; Li, Xinhui 1 ; Li, Jie 1 ;

作者机构： 1.Chinese Acad Fishery Sci, Pearl River Fisheries Res Inst, Guangzhou, Guangdong, Peoples R China

2.Key Lab Aquat Anim Immune Technol Guangdong Prov, Guangzhou, Peoples R China

3.Guangzhou Sci Observing & Expt Stn Natl Fisheries, Guangzhou, Peoples R China

4.Inst Rech Dev, UMR ISEM UM CNRS IRD 226, Montpellier, France

5.Hainan Acad Ocean & Fisheries Sci, Haikou, Hainan, Peoples R China

6.Henan Normal Univ, Coll Fisheries, Xinxiang, Henan, Peoples R China

关键词： fisheries management; phylogeography; species delimitation; species divergence; species identification

期刊名称：MOLECULAR ECOLOGY （ 影响因子：6.622； 五年影响因子：6.895 ）

ISSN： 0962-1083

年卷期： 2022 年 31 卷 14 期

页码：

收录情况： SCI

摘要： Geographical scale might be expected to impact significantly the efficiency of DNA barcoding as spatially comprehensive sampling provides opportunities to uncover intricate relationships among closely related species and to detect cryptic diversity for widespread taxa. Here, we present a DNA barcoding study on a Xencyprididae subfamily (Culterinae) involving the production of 998 newly generated DNA barcodes from East Asian drainages (80 localities). Together with 513 barcodes mined from BOLD and GenBank, a reference library consisting of 1511 DNA barcodes (116 localities) for 42 species was assembled, accounting for 66% of known Culterinae species. Intraspecific genetic distances are positively correlated to geographical scale, while a negative correlation is detected between interspecific genetic distances and geographical scale. The present study demonstrates that geographical scale influences the efficiency of DNA barcoding by narrowing the width of the barcoding gap. DNA-based species delimitation analyses delimited 44 molecular operational taxonomic units (MOTUs). Rampant cryptic diversity is detected within eight species with multiple MOTUs, whereas 25 species present mismatch between morphological and molecular delimitations. A total of 18 species are lumped into nine MOTUs due to low interspecific divergence and/or mixed lineages. Several MOTU divergences are hypothesized to relate to known biogeographical barriers and geological events during the Pliocene and Pleistocene. This study provides new insights into the taxonomy and phylogeography of the subfamily Culterinae.

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