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Population sequencing of cherry accessions unravels the evolution of Cerasus species and the selection of genetic characteristics in edible cherries

文献类型： 外文期刊

作者： Lei, Yahui 1 ; Jiu, Songtao 1 ; Xu, Yan 1 ; Chen, Baozheng 3 ; Dong, Xiao 2 ; Lv, Zhengxin 1 ; Bernard, Anthony 4 ; Liu, Xunju 1 ; Wang, Lei 1 ; Wang, Li 1 ; Wang, Jiyuan 1 ; Zhang, Zhuo 1 ; Cai, Yuliang 5 ; Zheng, Wei 6 ; Zhang, Xu 7 ; Li, Fangdong 7 ; Li, Hongwen 8 ; Liu, Congli 9 ; Li, Ming 9 ; Wang, Jing 10 ; Zhu, Jijun 11 ; Peng, Lei 12 ; Barreneche, Teresa 4 ; Yu, Fei 13 ; Wang, Shiping 1 ; Dong, Yang 2 ; Elisabeth, Dirlewanger 4 ; Duan, Shengchang 14 ; Zhang, Caixi 1 ;

作者机构： 1.Shanghai Jiao Tong Univ, Sch Agr & Biol, Dept Plant Sci, Shanghai 200240, Peoples R China

2.Yunnan Agr Univ, Coll Sci, Kunming 650201, Yunnan, Peoples R China

3.Yunnan Agr Univ, Coll Food Sci & Technol, Kunming 650201, Yunnan, Peoples R China

4.Univ Bordeaux, UMR BFP, INRAE, 71 Ave Edouard Bourlaux, F-33882 Villenave Dornon, France

5.Northwest A&F Univ, Coll Hort, Yangling 712100, Shaanxi, Peoples R China

6.Dalian Acad Agr Sci, Dalian 116036, Liaoning, Peoples R China

7.Yantai Acad Agr Sci, Yantai 265500, Shandong, Peoples R China

8.Sichuan Acad Agr Sci, Hort Res Inst, Chengdu 610066, Sichuan, Peoples R China

9.Chinese Acad Agr Sci, Zhengzhou Fruit Tree Res Inst, Zhengzhou 450009, Henan, Peoples R China

10.Beijing Acad Agr & Forestry Sci, Forestry & Fruit Res Inst, Beijing 100093, Peoples R China

11.Shanghai Bot Garden, Shanghai 200231, Peoples R China

12.Yunnan Agr Univ, Coll Landscape & Hort, Kunming 650201, Yunnan, Peoples R China

13.Yunnan Acad Agr Sci, Hort Res Inst, Kunming 650205, Yunnan, Peoples R China

14.Yunnan Agr Univ, Coll Plant Protect, Kunming 650201, Yunnan, Peoples R China

关键词： Cerasus subgenus; Population structure; Genetic diversity; Edible cherries; Selection signatures

期刊名称：MOLECULAR HORTICULTURE （ 影响因子：8.1； 五年影响因子：11.0 ）

ISSN： 2730-9401

年卷期： 2025 年 5 卷 1 期

页码：

收录情况： SCI

摘要： Cerasus is a subgenus of Prunus in the family Rosaceae that is popular owing to its ornamental, edible, and medicinal properties. Understanding the evolution of the Cerasus subgenus and identifying selective trait loci in edible cherries are crucial for the improvement of cherry cultivars to meet producer and consumer demands. In this study, we performed a de novo assembly of a chromosome-scale genome for the sweet cherry (Prunus avium L.) cultivar 'Burlat', covering 297.55 Mb and consisting of eight chromosomes with 33,756 protein-coding genes. The resequencing and population structural analysis of 384 Cerasus representative accessions revealed that they could be divided into four groups (Group 1, Group 2, Group 3, and Group 4). We inferred that Group 1 was the oldest population and Groups 2, 3, and 4 were clades derived from it. In addition, we found selective sweeps for fruit flavor and improved stress resistance in different varieties of edible cherries (P. avium, P. cerasus, and P. pseudocerasus). Transcriptome analysis revealed significant differential expression of genes associated with key pathways, such as sucrose starch and sucrose metabolism, fructose and mannose metabolism, and the pentose phosphate pathway, between the leaves and fruits of P. avium. This study enhances the understanding of the evolutionary processes of the Cerasus subgenus and provides resources for functional genomics research and the improvement of edible cherries.

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