Novel insights into the dissemination route of Japanese apricot (Prunus mume Sieb. et Zucc.) based on genomics
文献类型： 外文期刊
作者： Huang, Xiao 1 ; Ni, Zhaojun 1 ; Shi, Ting 1 ; Tao, Ryutaro 2 ; Yang, Qin 3 ; Luo, Changguo 4 ; Li, Yongping 5 ; Li, Hantao 1 ; Gao, Haidong 6 ; Zhou, Xiangyang 6 ; Xu, Lei 6 ; Gao, Zhihong 1 ;
作者机构： 1.Nanjing Agr Univ, Coll Hort, Nanjing, Jiangsu, Peoples R China
2.Kyoto Univ, Grad Sch Agr, Lab Pomol, Sakyo, Kyoto, Japan
3.Kaili Univ, Coll Life & Hlth Sci, Kaili, Guizhou, Peoples R China
4.Guizhou Acad Agr Sci, Inst Pomol, Guiyang, Guizhou, Peoples R China
5.Yunnan Green Food Dev Ctr, Kunming, Yunnan, Peoples R China
6.Genepioneer Biotechnol Co Ltd, Nanjing, Jiangsu, Peoples R China
关键词： Japanese apricot; genome resequencing; chloroplast genome; population structure; selective sweep analysis
期刊名称：PLANT JOURNAL （ 影响因子：7.091； 五年影响因子：8.028 ）
ISSN： 0960-7412
年卷期： 2022 年 110 卷 4 期
页码：
收录情况： SCI
摘要： Japanese apricot (Prunus mume) is an attractive fruit tree originating from China, and its cultivation history dates back 7000 years. In this study, we investigated the genetic diversity, population structure, and genetic relationship of Japanese apricots in different regions of China and Japan. The analyses of the genetic variation between wild and cultivated populations improved our understanding of the general mechanisms of domestication and improvement. A total of 146 accessions of Japanese apricot from different geographic locations were sequenced. The genetic diversity of wild and domesticated accessions (3.60 x 10(-3) and 3.51 x 10(-3), respectively) from China was high, and the effect of artificial selection pressure on domesticated accessions was small; however, the genetic diversity of artificially bred accessions decreased significantly (2.68 x 10(-3)) compared to domesticated accessions, which had an obvious improvement bottleneck effect. The chloroplast genome results showed that 41 haplotypes were detected, and Japanese apricots from the Yunnan region had the most haplotypes and the highest genetic diversity. The results revealed the dissemination route of Japanese apricot, not only along the Yangtze River basin system (from southwest China to Hunan, Jiangxi, and Anhui, and finally to the Jiangsu, Zhejiang, and Shanghai areas). Additionally, we discovered a second route for Japanese apricot dispersion, which was mostly in the Pearl River basin system, from southwest China to Libo of Guizhou and then to the Guangdong, Fujian, and Taiwan areas. This also showed that Japanese-bred accessions originated from Zhejiang, China. In addition, selective sweep analysis showed that most of the high-impact single nucleotide polymorphisms were identified in genes related to glucose metabolism, aromatic compound metabolism, flowering time, dormancy, and resistance to abiotic stress during the domestication and improvement of Japanese apricot.
- 相关文献
作者其他论文 更多>>
-
The Mh-miR393a-TIR1 module regulates Alternaria alternata resistance of Malus hupehensis mainly by modulating the auxin signaling
作者：Yu, Xinyi;Hu, Kaixu;Geng, Xiaoyue;Cao, Lifang;Zhou, Tingting;Lin, Xinxin;Liu, Hongcheng;Chen, Jingrui;Qu, Shenchun;Geng, Xiaoyue;Luo, Changguo
关键词：MiR393a; TIR1; Malus hupehensis; Disease resistance; Apple; Alternaria alternata
-
Estimation of maize straw production and appropriate straw return rate in China
作者：Liu, Wanmao;Liu, Guangzhou;Xie, Ruizhi;Ming, Bo;Wang, Keru;Xue, Jun;Li, Shaokun;Hou, Peng;Liu, Wanmao;Liu, Yuee;Yang, Yunshan;Guo, Xiaoxia;Wang, Yonghong;Zhao, Rulang;Zhang, Wenjie;Wang, Yongjun;Bian, Shaofeng;Ren, Hong;Zhao, Xiaoyan;Liu, Peng;Chang, Jianzhi;Zhang, Guohe;Liu, Jiayou;Yuan, Liuzheng;Zhao, Haiyan;Shi, Lei;Zhang, Lili;Yu, Lin;Gao, Julin;Yu, Xiaofang;Wang, Zhigang;Shen, Liguo;Ji, Ping;Yang, Shuzong;Zhang, Zhongdong;Xue, Jiquan;Wang, Xiuquan;Wang, Xiuquan;Lu, Tingqi;Dong, Benchun;Li, Gang;Ma, Baoxin;Li, Jinqin;Deng, Xiufeng;Liu, Yonghong;Yang, Qin;Jia, Chunlan;Chen, Xianping;Fu, Hua
关键词：Maize straw production; Straw return; Carbon input; Carbon emission; Soil carbon sequestration
-
Estimation of maize straw production and appropriate straw return rate in China
作者：Liu, Wanmao;Liu, Guangzhou;Xie, Ruizhi;Ming, Bo;Wang, Keru;Xue, Jun;Li, Shaokun;Hou, Peng;Liu, Wanmao;Liu, Yuee;Yang, Yunshan;Guo, Xiaoxia;Wang, Yonghong;Zhao, Rulang;Zhang, Wenjie;Wang, Yongjun;Bian, Shaofeng;Ren, Hong;Zhao, Xiaoyan;Liu, Peng;Chang, Jianzhi;Zhang, Guohe;Liu, Jiayou;Yuan, Liuzheng;Zhao, Haiyan;Shi, Lei;Zhang, Lili;Yu, Lin;Gao, Julin;Yu, Xiaofang;Wang, Zhigang;Shen, Liguo;Ji, Ping;Yang, Shuzong;Zhang, Zhongdong;Xue, Jiquan;Wang, Xiuquan;Wang, Xiuquan;Lu, Tingqi;Dong, Benchun;Li, Gang;Ma, Baoxin;Li, Jinqin;Deng, Xiufeng;Liu, Yonghong;Yang, Qin;Jia, Chunlan;Chen, Xianping;Fu, Hua
关键词：Maize straw production; Straw return; Carbon input; Carbon emission; Soil carbon sequestration
-
Quantifying maize grain yield losses caused by climate change based on extensive field data across China
作者：Hou, Peng;Liu, Wanmao;Xie, Ruizhi;Wang, Keru;Ming, Bo;Liu, Guangzhou;Xue, Jun;Li, Shaokun;Liu, Yuee;Liu, Wanmao;Yang, Haishun;Wang, Yonghong;Zhao, Rulang;Zhang, Wenjie;Wang, Yongjun;Bian, Shaofeng;Ren, Hong;Zhao, Xiaoyan;Liu, Peng;Chang, Jianzhi;Zhang, Guohe;Liu, Jiayou;Yuan, Liuzheng;Zhao, Haiyan;Shi, Lei;Zhang, Lili;Yu, Lin;Gao, Julin;Yu, Xiaofang;Wang, Zhigang;Shen, Liguo;Ji, Ping;Yang, Shuzong;Zhang, Zhongdong;Xue, Jiquan;Ma, Xiangfeng;Wang, Xiuquan;Lu, Tingqi;Dong, Benchun;Li, Gang;Ma, Baoxin;Li, Jinqin;Deng, Xiufeng;Liu, Yonghong;Yang, Qin;Jia, Chunlan;Chen, Xianping;Fu, Hua
关键词：Maize; Grain yield; Climate change; Temperature; Solar radiation
-
Overexpression of MdCPK1a gene, a calcium dependent protein kinase in apple, increase tobacco cold tolerance via scavenging ROS accumulation
作者：Dong, Hui;Wu, Chao;Wei, Menghan;Qu, Shenchun;Wang, Sanhong;Luo, Changguo
关键词：
-
How to increase maize production without extra nitrogen input
作者：Hou, Peng;Liu, Yuee;Liu, Wanmao;Liu, Guangzhou;Xie, Ruizhi;Wang, Keru;Ming, Bo;Huang, Changling;Li, Shaokun;Liu, Yuee;Liu, Wanmao;Wang, Yonghong;Zhao, Rulang;Zhang, Wenjie;Wang, Yongjun;Bian, Shaofeng;Ren, Hong;Zhao, Xiaoyan;Liu, Peng;Chang, Jianzhi;Zhang, Guohe;Liu, Jiayou;Yuan, Liuzheng;Zhao, Haiyan;Shi, Lei;Zhang, Lili;Yu, Lin;Gao, Julin;Yu, Xiaofang;Shen, Liguo;Yang, Shuzong;Zhang, Zhongdong;Xue, Jiquan;Ma, Xiangfeng;Wang, Xiuquan;Lu, Tingqi;Dong, Benchun;Li, Gang;Ma, Baoxin;Li, Jinqin;Deng, Xiufeng;Liu, Yonghong;Yang, Qin;Fu, Hua;Liu, Xingzhou;Chen, Xianping
关键词：Maize production; Nitrogen; Density; Reactive N losses intensity; GHG intensity
-
Identification and expression analysis of WRKY transcription factor genes in response to fungal pathogen and hormone treatments in apple (Malus domestica)
作者：Lui, Shuai;Zhu, Longming;Sha, Renhe;Qu, Shenchun;Cai, Binhua;Wang, Sanhong;Luo, Changguo
关键词：Alternaria alternata apple pathotype;Apple;Bioinformatics analysis;Expression profile analysis;Hormone treatment;WRKY transcription factor
