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Evidence for positive selection in Ser/Thr protein kinases (STKs) genes of Trichodesmium erythraeum

文献类型： 外文期刊

作者： Liang, Chengwei 1 ; Zhang, Xiaowen 2 ;

作者机构： 1.QUST, Dept Biol, Qingdao, Peoples R China

2.Chinese Acad Fishery Sci, Yellow Sea Fisheries Inst, Qingdao, Peoples R China

关键词： Ser/Thr protein kinases;Trichodesmium erythraeum;positive selection;maximum likelihood method

期刊名称：2009 3RD INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING, VOLS 1-11

ISSN：

年卷期： 2009 年

页码：

收录情况： SCI

摘要： Ser/Thr protein kinases, members of signal transduction systems, play important roles in responses to the environmental changes and intra-cellular signals. In comparison with extensive literature describing the function, comprehensive evolutionary analyses of STK gene family are rare. In this study, we employed a maximum likelihood method to detect evidence of positive selection on STKs. Several site-models in the PAML package were used and identified 17 positive selected sites. Sites mostly likely undergoing positive selection were found in the additional domain suggesting these sites may play a major role in their functional divergence. We postulate that STK domain and additional domain have different evolutionary patterns. The sites identified to be under positive selection would provide targets for further structural and functional analyses.

  • 相关文献

[1]Evidence for positive selection in Ser/Thr protein kinases (STKs) genes of Trichodesmium erythraeum. Chengwei Liang,Xiaowen Zhang. 2009

[2]De novo assembly and characterization of the Hucho taimen transcriptome. Tong, Guang-Xiang,Xu, Wei,Zhang, Yong-Quan,Zhang, Qing-Yu,Yin, Jia-Sheng,Kuang, You-Yi. 2018

[3]Molecular diversity and evolution of defensins in the manila clam Ruditapes philippinarum. Wang, Qing,Yang, Dinglong,Yu, Qian,Li, Fei,Cong, Ming,Ji, Chenglong,Wu, Huifeng,Zhao, Jianmin,Zhang, Linbao,Yang, Dinglong,Yu, Qian.

[4]Transcriptome analysis revealed positive selection of immune-related genes in tilapia. Xiao, Jun,Zhong, Huan,Luo, Yongju,Gan, Xi,Zhou, Yi,Liu, Zhen,Zhou, Yi,Yu, Fan.

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