Global transcriptome analysis reveals potential genes associated with genic male sterility of rapeseed (Brassica napus L.)
文献类型: 外文期刊
作者: Jiang, Jianxia 1 ; Xu, Pengfei 2 ; Zhang, Junying 1 ; Li, Yanli 1 ; Zhou, Xirong 1 ; Jiang, Meiyan 1 ; Zhu, Jifeng 1 ; Wang, Weirong 1 ; Yang, Liyong 1 ;
作者机构: 1.Shanghai Acad Agr Sci, Crop Breeding & Cultivat Res Inst, Shanghai, Peoples R China
2.Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, Joint Int Res Lab Metab & Dev Sci, Shanghai, Peoples R China
关键词: Brassica napus L; rapeseed; transcriptome; genic male sterility; pollen development
期刊名称:FRONTIERS IN PLANT SCIENCE ( 影响因子:6.627; 五年影响因子:7.255 )
ISSN: 1664-462X
年卷期: 2022 年 13 卷
页码:
收录情况: SCI
摘要: Rapeseed is the third leading source of edible oil in the world. Genic male sterility (GMS) lines provide crucial material for harnessing heterosis for rapeseed. GMS lines have been widely used successfully for rapeseed hybrid production. The physiological and molecular mechanism of pollen development in GMS lines of rapeseed (Brassica napus L.) need to be determined for the creation of hybrids and cultivation of new varieties. However, limited studies have focused on systematically mining genes that regulate the pollen development of GMS lines in B. napus. In the present study, to determine the stage at which pollen development begins to show abnormality in the GMS lines, we performed semi-thin section analysis of the anthers with five pollen development stages. The results indicated that the abnormal pollen development in DGMS lines might start at the meiotic stage, and abnormal pollen development in RGMS lines probably occurred before the tetrad stage. To investigate the critical genes and pathways involved in pollen development in GMS lines, we constructed and sequenced 24 transcriptome libraries for the flower buds from the fertile and sterile lines of two recessive GMS (RGMS) lines (6251AB and 6284AB) and two dominant GMS (DGMS) lines (4001AB and 4006AB). A total of 23,554 redundant DEGs with over two-fold change between sterile and fertile lines were obtained. A total of 346 DEGs were specifically related to DGMS, while 1,553 DEGs were specifically related to RGMS. A total of 1,545 DEGs were shared between DGMS and RGMS. And 253 transcription factors were found to be differentially expressed between the sterile and fertile lines of GMS. In addition, 6,099 DEGs possibly related to anther, pollen, and microspore development processes were identified. Many of these genes have been reported to be involved in anther and microspore developmental processes. Several DEGs were speculated to be key genes involved in the regulation of fertility. Three differentially expressed genes were randomly selected and their expression levels were verified by quantitative PCR (qRT-PCR). The results of qRT-PCR largely agreed with the transcriptome sequencing results. Our findings provide a global view of genes that are potentially involved in GMS occurrence. The expression profiles and function analysis of these DEGs were provided to expand our understanding of the complex molecular mechanism in pollen and sterility development in B. napus.
- 相关文献
作者其他论文 更多>>
-
Mapping of the Waxy Gene in Brassica napus L. via Bulked Segregant Analysis (BSA) and Whole-Genome Resequencing
作者:Zhang, Junying;Zhu, Jifeng;Yang, Liyong;Li, Yanli;Wang, Weirong;Zhou, Xirong;Jiang, Jianxia
关键词:Brassica napus L; bulked segregant analysis; whole-genome resequencing; waxy; waxless
-
Diurnal gene oscillations modulated by RNA metabolism in tomato
作者:Zhang, Yingying;Zhu, Weimin;Xu, Pengfei;Yu, Xiang;Xue, Wanxin
关键词:RNA metabolism; Co-translational RNA decay; proportion uncapped; diurnal oscillations; diel rhythm; Solanum lycopersicum
-
QTL mapping for seed density per silique in Brassica napus
作者:Zhu, Jifeng;Lei, Lei;Wang, Weirong;Jiang, Jianxia;Zhou, Xirong
关键词:
-
miR398 Attenuates Heat-Induced Leaf Cell Death via Its Target CSD1 in Chinese Cabbage
作者:Cao, Biting;Hu, Shengwu;Cao, Biting;Hu, Shengwu;Cao, Biting;Bai, Jinjuan;Wang, Xuan;Li, Yajie;He, Yuke;Jiang, Jianxia;Shao, Wenna;Yu, Xiang
关键词:Brassica rapa; cell death; CSD1; heat resistance; miR398
-
Mining favorable alleles for five agronomic traits from the elite rapeseed cultivar Zhongshuang 11 by QTL mapping and integration
作者:Zhou, Xianming;Dai, Lihong;Wang, Pengfei;Liu, Ying;Xie, Zhaoqi;Zhang, Haiyan;Xin, Qiang;Yang, Guangsheng;Hong, Dengfeng;Wan, Lili;Yang, Liyong
关键词:Rapeseed; ZS11; QTL; Five agronomic traits; Candidate genes
-
Identification of miRNAs and their target genes in genic male sterility lines in Brassica napus by small RNA sequencing
作者:Jiang, Jianxia;Li, Yanli;Zhou, Xirong;Jiang, Meiyan;Zhang, Junying;Zhu, Jifeng;Wang, Weirong;Yang, Liyong;Xu, Pengfei;Li, Yajie
关键词:Brassica napus; miRNAs; Genic male sterility; Pollen development; miR159; Silique development
-
Development of genome-wide SSR markers in rapeseed by next generation sequencing
作者:Zhu, Jifeng;Zhang, Junying;Jiang, Meiyan;Wang, Weirong;Jiang, Jianxia;Li, Yanli;Yang, Liyong;Zhou, Xirong
关键词:Brassica napus L; Next generation sequencing; SSR markers; Primers amplification