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Genome organization and variation in the 3 '-partial sequence of garlic latent virus in China

文献类型： 外文期刊

作者： Chen, J 1 ; Zheng, HY 2 ; Chen, JP 3 ; Yang, CL 4 ;

作者机构： 1.Zhejiang Acad Agr Sci, Dept Virol, Hangzhou 310021, Peoples R China

2.Zhejiang Univ, Coll Life Sci, Hangzhou 310029, Peoples R China

3.Huazhong Agr Univ, Dept Plant Protect, Wuhan 430070, Peoples R China

4.Shandong Acad Agr Sci, Dept Plant Protect, Jinan 250100, Peoples R China

关键词： garlic latent virus;nucleotide sequence;genome organization;variation

期刊名称：SCIENCE IN CHINA SERIES C-LIFE SCIENCES （ 影响因子：1.61； 五年影响因子：1.148 ）

ISSN： 1006-9305

年卷期： 2002 年 45 卷 4 期

页码：

收录情况： SCI

摘要： Ten different isolates of a carlavirus were detected by degenerate PCR from 12 garlic samples collected from 6 provinces in China, and the complete genome sequence of the Zhejiang isolate ZJ1 and 3'-terminal sequences of 9 other isolates were determined. The RNA genome of isolate ZJ1 consisted of 8363nts excluding the 3'-poly (A) tail, and the genome organization was similar to other carlaviruses with 6 open reading frames encoding a replicase, TGB1, TGB2, TGB3, CP and NABP respectively. Sequence comparisons showed that all 10 isolates were Garlic latent virus (GarLV). The variations in the TGB2, TGB3 and NABP were more significant than those in the CP. High homology was also detected between those isolates and Shallot latent virus (ShLV). Phylogenetic analysis suggested that GarLV isolates from garlic can be divided into 4 main groups and Chinese isolates belonged to each group. This is the first reported molecular analysis of members of the genus Carlavirus in China.

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