Comparative transcriptome analysis of Ziziphus jujuba infected by jujube witches' broom phytoplasmas
文献类型: 外文期刊
作者: Fan, Xin-Ping 1 ; Liu, Wei 1 ; Qiao, Yong-Sheng 1 ; Shang, Yong-Jin 1 ; Wang, Guo-Ping 1 ; Tian, Xin 1 ; Han, Yuan-Hua 1 ;
作者机构: 1.Shanxi Acad Agr Sci, Inst Pomol, Taiyuan 030031, Shanxi, Peoples R China
2.Shanxi Key Lab Germplasm Improvement & Utilizat P, Taiyuan 030031, Shanxi, Peoples R China
3.Shanxi Agr Univ, Coll Agr, Taigu 030800, Peoples R China
4.Alma Mater Studiorum Univ Bologna, Plant Pathol, Viale Fanin 42, I-40127 Bologna, Italy
关键词: Jujube witches' broom;Phytoplasma;Transcriptome sequencing
期刊名称:SCIENTIA HORTICULTURAE ( 影响因子:3.463; 五年影响因子:3.672 )
ISSN: 0304-4238
年卷期: 2017 年 226 卷
页码:
收录情况: SCI
摘要: Ziziphus jujuba is one of the most important and widely grown fruits in China. Jujube witches' broom (JWB), an important disease in Z. jujube, could cause heavy loss for its industry. The disease is associated with the presence of 'Candidates Phytoplasma ziziphi', a prokaryote, and very little knowledge is known about its interactions with jujube plants. Therefore, in the present study cDNA samples from healthy and diseased plants were sequenced on Illumina HISeq2000 and gene expression and metabolism regulation were compared. In the two libraries obtained from the leaves, 4266 differentially expressed genes (DEGs) were identified. Among them, 2070 genes were upregulated, and 2196 genes were downregulated. The comparison between the libraries from flowers showed 3800 DEGs, with 1965 upregulated and 1835 down-regulated genes. Among all these some specific genes were identified to be functionally related to the amino acid metabolism and the carotenoid pathway, which may be related to the lack of nutrition and the main symptoms of yellowing, brooming and small leaves. The results of this work provides a valuable resource for further studies of the disease on genetic and molecular levels.
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