De novo assembly, gene annotation, and marker development of mulberry (Morus atropurpurea) transcriptome
文献类型: 外文期刊
作者: Dai, Fanwei 1 ; Tang, Cuiming 1 ; Wang, Zhenjiang 1 ; Luo, Guoqing 1 ; He, Li 1 ; Yao, Liuhui 1 ;
作者机构: 1.Guangdong Acad Agr Sci, Sericultural & Agrifood Res Inst, Guangzhou 510610, Guangdong, Peoples R China
关键词: Mulberry;Transcriptome;Paired-end sequencing;De novo assembly;SSR
期刊名称:TREE GENETICS & GENOMES ( 影响因子:2.297; 五年影响因子:2.547 )
ISSN: 1614-2942
年卷期: 2015 年 11 卷 2 期
页码:
收录情况: SCI
摘要: Mulberry (Morus atropurpurea) is an economically important tree with a long history of extensive cultivation in Asia because it is the exclusive food source for the silkworm (Bombyx mori). Recently, mulberry has gained additional commercial value as a source of medicinal compounds, as animal fodder, and for landscaping. In the present work, the mulberry transcriptome was sequenced using the Illumina paired-end sequencing technology. A total of 105 million 90-bp paired-end reads were generated, and 60,069 unigenes were assembled with an N50 of 1219 bp. Based on a sequence similarity search with known proteins, 40,121 genes were identified. Among these genes, 31,548 were annotated with 55 gene ontology functional categories, 7790 had a Cluster of Orthologous Groups classification, and 23,188 mapped to 128 biological pathways in the Kyoto Encyclopedia of Genes and Genomes pathway database. In addition, 10,268 microsatellites were developed and characterized as potential molecular markers. These data will accelerate the understanding of mulberry growth and development mechanisms and facilitate gene discovery and functional genomic studies in mulberry.
- 相关文献
作者其他论文 更多>>
-
Mulberry (Morus alba L.) planting increased the abundance of soil carbon cycling functional genes by improving soil properties, and further enhanced the stability of soil carbon pool
作者:Zhu, Meina;Yang, Zi;Tsigbey, Victor Edem;Cui, Zipei;Zhang, Wenfeng;Li, Jianbin;Li, Haonan;Shahid, Hanfa;Zhao, Weiguo;Zhu, Meina;Yang, Zi;Tsigbey, Victor Edem;Cui, Zipei;Zhang, Wenfeng;Li, Jianbin;Li, Haonan;Shahid, Hanfa;Zhao, Weiguo;Wang, Zhenjiang;Zhu, Weijun;Qiu, Changyu;Lin, Qiang;Zhao, Mengdi
关键词:Carbon pool stability; Oxidizable organic carbon fraction; Aggregate classification; Ecologically fragile area; Mulberry
-
Transcriptome-based analysis reveals key molecular mechanisms and functional characterization of MaCAX3 gene involved in manganese stress responses in mulberry plants
作者:Li, Jianbin;Ackah, Michael;Shen, Manman;Zhu, Meina;Zhao, Weiguo;Li, Jianbin;Ackah, Michael;Shen, Manman;Zhu, Meina;Zhao, Weiguo;Amoako, Frank Kwarteng;Ackah, Michael;Amoako, Frank Kwarteng;Asare, Aaron Tettey;Wang, Zhenjiang;Lin, Qiang;Qiu, Changyu;Zhao, Mengdi
关键词:
Morus alba ; Manganese; Transcriptome; Gene silencing; Cell wall polysaccharides;MaCAX3 gene; Reactive oxygen species -
Combined modified atmosphere package and melatonin treatments delay the senescence of bitter bamboo shoots by inhibiting the cell wall changes after harvest
作者:Wang, Ling;Zhang, Shuo;Luo, Zheng;Chen, Yulong;Qi, Yingwei;Ye, Mingqiang;Chen, Feiping;Dai, Fanwei;Huang, Hua
关键词:Bitter bamboo shoot; Postharvest shelf-life; Modified atmosphere package; Melatonin; Lignin; Cell wall polysaccharides
-
Sustained release of gaseous chlorine dioxide from alpha-cyclodextrin: An innovative method for strawberry preservation
作者:Chen, Linyan;Jing, Haohan;Cao, Yuantong;Liu, Yao;Zhong, Tian;Dong, Yuhe;Wu, Tong;Zhu, Wanying;Dai, Fanwei;Chen, Minhui;Liu, Yao;He, Nan;Huang, Ran;Huang, Ran;Huang, Ran
关键词:Gaseous chlorine dioxide; Cyclodextrin inclusion; Antifungal; Nanoencapsulation; Sustained release; Food preservation
-
A spatial source-oriented and probability-based risk-assessment framework for heavy metal and PAH contamination of urban soils in Guangzhou, China
作者:Chen, Lian;Lin, Sen;Wang, Dan;Li, Zhiyi;Wang, Yuan;Wang, Zhenjiang;Xie, Minghe;Li, Gaocong;Wang, Zhenjiang
关键词:Source-sink; Probability-based; Source-oriented; Health risk assessment; Co-contamination
-
The biological functions of proanthocyanidin and its application in pig production
作者:Yu, Aiying;Chen, Lian;Wang, Dan;Li, Zhiyi;Wang, Yuan;Wang, Zhenjiang;Lin, Sen;Sun, Lingli;Sun, Lingli
关键词:proanthocyanidins; biological functions; antioxidant; anti-inflammatory; pigs
-
Impact of high-voltage electric field coupled with heat transfer medium on the thawing quality of lychee
作者:Xie, Daiqin;Xie, Daiqin;Rong, Haozhao;Xu, Yujuan;Yu, Yuanshan;Zou, Bo;Dai, Fanwei;Li, Lu;Peng, Jian;Cheng, Lina;Rong, Haozhao
关键词:Litchi; Electrostatic field thawing; Nutritional quality; Flavor



