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Analysis of genetic diversity of the heat shock protein 70 gene on the basis of abundant sequence polymorphisms in chicken breeds

文献类型： 外文期刊

作者： Gan, J. K. 1 ; Jiang, L. Y. 3 ; Kong, L. N. 1 ; Zhang, X. Q. 1 ; Luo, Q. B. 1 ;

作者机构： 1.South China Agr Univ, Coll Anim Sci, Dep Anim Genet Breeding & Reprod, Guangzhou, Guangdong, Peoples R China

2.Xinguang Agr & Anim Husb Co Ltd, Foshan, Peoples R China

3.South China Agr Univ, Minist Agr, Key Lab Chicken Genet Breeding & Reprod, Guangzhou, Guangdong, Peoples R China

4.South China Agr Univ, Minist Agr, Key Lab Chicken Genet Breeding & Rep

关键词： Chicken;HSP70;Single nucleotide polymorphism;Haplotype

期刊名称：GENETICS AND MOLECULAR RESEARCH （ 影响因子：0.764； 五年影响因子：0.912 ）

ISSN： 1676-5680

年卷期： 2015 年 14 卷 1 期

页码：

收录情况： SCI

摘要： This study was designed to detect the sequence variation of the chicken heat shock protein 70 (HSP70) gene. A total of 102 individuals from 8 native Chinese breeds together with Dwarf White Chicken and Red Junglefowl were used to detect sequence variations. The coding regions of the chicken HSP70 gene from 102 individuals were cloned and sequenced. Thirty-six variations were identified, which included 34 single nucleotide polymorphisms and 2 indel mutations. Fifty-seven haplotypes were observed, of which, 43 were breed-specific and 14 were shared. There were 7 Red Junglefowl-specific haplotypes, while Haidong and Silkie only had 2 specific haplotypes. Eleven and 3 haplotypes were shared between and within species, respectively. The variation in nucleotide diversity (Pi) and average number of nucleotide differences (K) among species were consistent. The total Pi of HSP70 was 0.0016, and the total K was 4.1998. The Pi value of Red Junglefowl was the highest (0.0018) and K was 4.8000, while the Pi of Silkie was the lowest (0.0010) and K was 2.5000. These results demonstrated that variation in chicken HSP70 was abundant between and within species.

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