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Genome-wide identification and expression analysis of the CaLAX and CaPIN gene families in pepper (Capsicum annuum L.) under various abiotic stresses and hormone treatments

文献类型： 外文期刊

作者： Zhang, Chenghao 1 ; Dong, Wenqi 1 ; Huang, Zong-an 2 ; Cho, MyeongCheoul 3 ; Yu, Qingcang 4 ; Wu, Chuanyu 4 ; Yu, Chen 1 ;

作者机构： 1.Zhejiang Acad Agr Sci, Minist Agr, Vegetable Res Inst, Key Labortatory Creat Agr, Hangzhou 310021, Zhejiang, Peoples R China

2.Wenzhou Acad Agr Sci, Inst Vegetable Sci, Wenzhou Vocat Coll Sci & Technol, Key Lab Crop Breeding South Zhejiang, Wenzhou 325014, Peoples R China

3.Rural Dev Adm, Natl Inst Hort & Herbal Sci, Vegetable Res Div, Suwon 440706, South Korea

4.Zhejiang Sci Tech Univ, Coll Fac Informat, Hangzhou 310018, Zhejiang, Peoples R China

关键词： abiotic stresses;auxin;Capsicum annuum;expression pattern;LAX;PIN

期刊名称：GENOME （ 影响因子：2.166； 五年影响因子：2.474 ）

ISSN： 0831-2796

年卷期： 2018 年 61 卷 2 期

页码：

收录情况： SCI

摘要： Auxin plays key roles in regulating plant growth and development as well as in response to environmental stresses. The intercellular transport of auxin is mediated by the following four gene families: ATP-binding cassette family B (ABCB), auxin resistant1/like aux1 (AUX/LAX), PIN-formed (PIN), and PIN-like (PILS). Here, the latest assembled pepper (Capsicum annuum L.) genome was used to characterise and analyse the CaLAX and CaPIN gene families. Genome-wide investigations into these families, including chromosomal distributions, phytogenic relationships, and intron/exon structures, were performed. In total, 4 CaLAX and 10 CaPIN genes were mapped to 10 chromosomes. Most of these genes exhibited varied tissue-specific expression patterns assessed by quantitative real-time PCR. The expression profiles of the CaLAX and CaPIN genes under various abiotic stresses (salt, drought, and cold), exogenous phytohormones (IAA, 6-BA, ABA, SA, and MeJA), and polar auxin transport inhibitor treatments were evaluated. Most CaLAX and CaPIN genes were altered by abiotic stress at the transcriptional level in both shoots and roots, and many CaLAX and CaPIN genes were regulated by exogenous phytohormones. Our study helps to identify candidate auxin transporter genes and to further analyse their biological functions in pepper development and in its adaptation to environmental stresses.

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