Identification of Differentially Expressed Genes in Breast Muscle and Skin Fat of Postnatal Pekin Duck
文献类型： 外文期刊
作者： Xu, Tieshan 1 ; Gu, Lihong 1 ; Schachtschneider, Kyle Michael 3 ; Liu, Xiaolin 4 ; Huang, Wei 1 ; Xie, Ming 1 ; Hou, S 1 ;
作者机构： 1.CAAS, IAS, Beijing, Peoples R China
2.Chinese Acad Trop Agr Sci, Trop Crops Genet Resources Inst, Danzhuo, Hainan, Peoples R China
3.Univ Illinois, Dept Anim Sci, Urbana, IL 61801 USA
4.Northwest A&F Univ, Coll Anim Sci & Technol, Shaanxi Key Lab Mol Biol Agr, Yangling, Shaanxi, Peoples R China
期刊名称：PLOS ONE （ 影响因子：3.24； 五年影响因子：3.788 ）
ISSN： 1932-6203
年卷期： 2014 年 9 卷 9 期
页码：
收录情况： SCI
摘要： Lean-type Pekin duck is a commercial breed that has been obtained through long-term selection. Investigation of the differentially expressed genes in breast muscle and skin fat at different developmental stages will contribute to a comprehensive understanding of the potential mechanisms underlying the lean-type Pekin duck phenotype. In the present study, RNA-seq was performed on breast muscle and skin fat at 2-, 4-and 6-weeks of age. More than 89% of the annotated duck genes were covered by our RNA-seq dataset. Thousands of differentially expressed genes, including many important genes involved in the regulation of muscle development and fat deposition, were detected through comparison of the expression levels in the muscle and skin fat of the same time point, or the same tissue at different time points. KEGG pathway analysis showed that the differentially expressed genes clustered significantly in many muscle development and fat deposition related pathways such as MAPK signaling pathway, PPAR signaling pathway, Calcium signaling pathway, Fat digestion and absorption, and TGF-beta signaling pathway. The results presented here could provide a basis for further investigation of the mechanisms involved in muscle development and fat deposition in Pekin duck.
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