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The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness

文献类型： 外文期刊

作者： Gebelin, Virginie 1 ; Leclercq, Julie 1 ; Kuswanhadi 2 ; Argout, Xavier 1 ; Chaidamsari, Tetty 3 ; Hu, Songnian 4 ; Ta 1 ;

作者机构： 1.CIRAD, UMR AGAP, F-34398 Montpellier, France

2.IRRI, Sembawa Res Ctr, Palembang, Indonesia

3.IBRIEC, Bogor 16151, Indonesia

4.Chinese Acad Sci, Beijing Inst Gen, Beijing, Peoples R China

5.Chinese Acad Trop Agr Sci, Rubber Res Inst, Danzhou, Peoples R China

关键词： gene expression;miRNA;MIR gene;next-generation sequencing;rubber tree

期刊名称：TREE PHYSIOLOGY （ 影响因子：4.196； 五年影响因子：4.727 ）

ISSN： 0829-318X

年卷期： 2013 年 33 卷 10 期

页码：

收录情况： SCI

摘要： Natural rubber is harvested by tapping Hevea brasiliensis (Willd. ex A. Juss.) Mull. Arg. Harvesting stress can lead to tapping panel dryness (TPD). MicroRNAs (miRNAs) are induced by abiotic stress and regulate gene expression by targeting the cleavage or translational inhibition of target messenger RNAs. This study set out to sequence miRNAs expressed in latex cells and to identify TPD-related putative targets. Deep sequencing of small RNAs was carried out on latex from trees affected by TPD using Solexa technology. The most abundant small RNA class size was 21 nucleotides for TPD trees compared with 24 nucleotides in healthy trees. By combining the LeARN pipeline, data from the Plant MicroRNA database and Hevea EST sequences, we identified 19 additional conserved and four putative species-specific miRNA families not found in previous studies on rubber. The relative transcript abundance of the Hbpre-MIR159b gene increased with TPD. This study revealed a small RNA-specific signature of TPD-affected trees. Both RNA degradation and a shift in miRNA biogenesis are suggested to explain the general decline in small RNAs and, particularly, in miRNAs.

  • 相关文献

[1]Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. Gebelin, Virginie,Argout, Xavier,Engchuan, Worrawat,Pitollat, Bertrand,Duan, Cuifang,Montoro, Pascal,Leclercq, Julie,Engchuan, Worrawat,Duan, Cuifang. 2012

[2]Regulation of MIR Genes in Response to Abiotic Stress in Hevea brasiliensis. Gebelin, Virginie,Leclercq, Julie,Montoro, Pascal,Hu, Songnian,Tang, Chaorong. 2013

[3]Next-generation sequencing, assembly, and comparative analyses of the latex transcriptomes from two elite Hevea brasiliensis varieties. Li, Dejun,Liu, Hui,Zhao, Manman,Deng, Zhi,Li, Yu,Zeng, Rizhong,Tian, Weimin,Hao, Lili,Zhao, Manman. 2015

[4]Characterization of Sugar Contents and Sucrose Metabolizing Enzymes in Developing Leaves of Hevea brasiliensis. Zhu, Jinheng,Qi, Jiyan,Fang, Yongjun,Xiao, Xiaohu,Lan, Jixian,Tang, Chaorong,Zhu, Jinheng,Lan, Jixian,Tang, Chaorong,Li, Jiuhui. 2018

[5]Transcriptome sequencing and comparative analysis reveal long-term flowing mechanisms in Hevea brasiliensis latex. Wei, Fang,Luo, Shigiao,Zheng, Qiankun,Qiu, Jian,Yang, Wenfeng,Wu, Ming,Xiao, Xianzhou.

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[7]De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.). Li, Dejun,Deng, Zhi,Qin, Bi,Liu, Xianghong,Men, Zhonghua. 2012

[8]Design of natural rubber precision ditch fertilization machine. Wang, Yeqin,Deng, Yiguo,Zhang, Yuan,Wei, Lijiao. 2017

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[10]Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis. Liu, Jin-Ping,Zhuang, Yu-Fen,Guo, Xiu-Li,Li, Yi-Jian. 2016

[11]Transcriptome sequencing and analysis of rubber tree (Hevea brasiliensis Muell.) to discover putative genes associated with tapping panel dryness (TPD). Liu, Jin-Ping,Tian, Xiao-Yan,Xia, Zhi-Qiang,Li, Yi-Jian. 2015

[12]Characterization of HbEREBP1, a wound-responsive transcription factor gene in laticifers of Hevea brasiliensis Muell. Arg.. Chen, Yue-Yi,Wang, Li-Feng,Dai, Long-Jun,Yang, Shu-Guang,Tian, Wei-Min,Chen, Yue-Yi.

[13]Ultrasound-assisted tapping of latex from Para rubber tree Hevea brasiliensis. She, Fenghua,Wang, Jin,An, Feng,Lin, Weifu,Zhu, Deming,She, Fenghua,Kong, Lingxue,An, Feng. 2013

[14]Proteome analysis of interaction between rootstocks and scions in Hevea brasiliensis. Yuan, Kun,Yang, Li-Fu,Wang, Zhen-Hui,Lin, Wei-Fu,Cao, Jian-Hua,Yuan, Kun,Yang, Li-Fu,Wang, Zhen-Hui,Lin, Wei-Fu,Cao, Jian-Hua,Ding, Xuan. 2011

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[16]Molecular cloning and characterization of S-adenosylmethionine decarboxylase gene in rubber tree (Hevea brasiliensis). Zhao, Manman,Liu, Hui,Deng, Zhi,Chen, Jiangshu,Yang, Hong,Li, Dejun,Zhao, Manman,Li, Huiping,Xia, Zhihui.

[17]Development, characterization, genetic diversity and cross-species/genera transferability of ILP markers in rubber tree (Hevea brasiliensis). Li, Dejun,Deng, Zhi,Xia, Zhihui,Liu, Xianghong,Feng, Fuying.

[18]Identification of genes differentially expressed in the roots of rubber tree (Hevea brasiliensis Muell. Arg.) in response to phosphorus deficiency. He, Peng,Qin, Huaide,Wu, Min,Wu, Bingsun,Wei, Jiashao,Wang, Dapeng.

[19]Development and characterization of intron-flanking EST-PCR markers in rubber tree (Hevea brasiliensis Muell. Arg.). Li, Dejun,Deng, Zhi,Liu, Xianghong,Xia, Zhihui,Dong, Junmei,Feng, Fuying.

[20]Cloning and characterization of HbMT2a, a metallothionein gene from Hevea brasiliensis Muell. Arg differently responds to abiotic stress and heavy metals. Li, Yan,Chen, Yue Yi,Yang, Shu Guang,Tian, Wei Min.

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