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Chromosome-level genome assembly of the two-spotted spider mite Tetranychus urticae

文献类型: 外文期刊

作者: Cao, Li-Jun 1 ; Guan, Tian-Bo 1 ; Chen, Jin-Cui 2 ; Yang, Fangyuan 2 ; Liu, Jing-Xian 1 ; Jin, Feng-Liang 1 ; Wei, Shu-Jun 2 ;

作者机构: 1.South China Agr Univ, Coll Plant Protect, Guangzhou, Peoples R China

2.Beijing Acad Agr & Forestry Sci, Inst Plant Protect, Beijing, Peoples R China

期刊名称:SCIENTIFIC DATA ( 影响因子:5.8; 五年影响因子:8.9 )

ISSN:

年卷期: 2024 年 11 卷 1 期

页码:

收录情况: SCI

摘要: The two-spotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae), is a notorious pest in agriculture that has developed resistance to almost all chemical types used for its control. Here, we assembled a chromosome-level genome for the TSSM using Illumina, Nanopore, and Hi-C sequencing technologies. The assembled contigs had a total length of 103.94 Mb with an N50 of 3.46 Mb, with 87.7 Mb of 34 contigs anchored to three chromosomes. The chromosome-level genome assembly had a BUSCO completeness of 94.8%. We identified 15,604 protein-coding genes, with 11,435 genes that could be functionally annotated. The high-quality genome provides invaluable resources for the genetic and evolutionary study of TSSM.

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