Chromosome-level genome assembly of the largefin longbarbel catfish (Hemibagrus macropterus)
文献类型： 外文期刊
作者： Ye, Huan 1 ; Fan, Jiahui 1 ; Hou, Yanling 1 ; Yue, Huamei 1 ; Ruan, Rui 1 ; Li, Shuang 2 ; Hu, Chongjiang 2 ; Xie, Yong 2 ; Li, Chuangju 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Key Lab Freshwater Biodivers Conservat, Minist Agr & Rural Affairs, Yangtze River Fisheries Res Inst, Wuhan, Peoples R China
2.Chongqing Fishery Sci Res Inst, Chongqing, Peoples R China
关键词： Hemibagrus macropterus; genome assembly; genome annotation; comparative genomics; Hi-C; PacBio
期刊名称：FRONTIERS IN GENETICS （ 影响因子：3.7； 五年影响因子：4.3 ）
ISSN：
年卷期： 2023 年 14 卷
页码：
收录情况： SCI
摘要： The largefin longbarbel catfish, Hemibagrus macropterus, is an economically important fish species in southwestern China, with males growing faster than females. This study presents a high-quality chromosome-level genome assembly of the largefin longbarbel catfish, generated by integrating Illumina short reads, PacBio HiFi long reads, and Hi-C data. The assembled genome size was 858.5 Mb, with a contig and scaffold N50 of 5.8 Mb and 28.4 Mb, respectively. A total of 656 contigs were successfully anchored to 30 pseudochromosomes with a BUSCO score of 97.7%, consistent with the number of chromosomes analyzed by karyotype. The genome contained 29.5% repeat sequences, and a predicted total of 26,613 protein-coding genes, of which 25,769 (96.8%) were functionally annotated in differen databases. Evolutionary analysis showed that H. macropterus was most closely related to H. wyckioides, with a divergence time of approximately 16.3 million years. Chromosomal syntenic relationships among H. macropterus, H. wyckioides, and Pelteobagrus fulvidraco revealed a one-to-one relationship for most chromosomes, except for break, fission, and inversion of some chromosomes. The first high-quality reference genome will not only provide a valuable genetic resource for the study of sex determination mechanisms and genetic breeding of largefin longbarbel catfish, but also contribute to comparative analyses of genome and chromosome evolution within Siluriformes.
- 相关文献
作者其他论文 更多>>
-
Effects of sperm concentration on the quality of cryopreserved sperm in Yangtze sturgeon (Acipenser dabryanus)
作者：Zhu, Shuang;Zhu, Shuang;Ye, Huan;Li, Xin;Qiao, Xinmei;Xiong, Wei;Zhong, Jia;Shen, Li;Du, Hao
关键词：Yangtze sturgeon; Sperm cryopreservation; Sperm concentration; Sperm quality; Flow cytometry
-
The Effects of Dietary n-3 Highly Unsaturated Fatty Acids on Growth, Antioxidant Capacity, Immunity, and Oxylipin Profiles in Acipenser dabryanus
作者：Wu, Jinping;Xiong, Wei;Liu, Wei;Wu, Jinming;Ruan, Rui;Wang, Yuqi;Liu, Yuan;Leng, Xiaoqian;Li, Pengcheng;Zhong, Jia;Du, Hao;Fu, Peng;Zhang, Chuang
关键词：Acipenser dabryanus; dietary n-3 HUFA levels; growth performance; antioxidant; immunity capacity; serum oxylipin
-
Effects of phosphorus on growth, biochemical parameters and intestinal microbiota of the juvenile hybrid of Acipenser baerii 9xAcipenser schrenckii ♂
作者：Chu, Zhipeng;Jin, Jiali;Li, Luoxin;Liu, Wei;Ruan, Rui;Li, Chuangju;Zhou, Wenbo;Chai, Yi;Chu, Zhipeng;Li, Luoxin;Hong, Yucong;Chai, Yi;Chu, Zhipeng;Li, Yan;Sun, Jianwei
关键词：Hybrid sturgeon; Phosphorus; Growth; Serum biochemical; Intestinal microbiota
-
Genetic diversity and population structure analysis of blunt snout bream (Megalobrama amblycephala) in the Yangtze River Basin: Implications for conservation and utilization
作者：Dong, Fang;Wei, Qiwei;Dong, Fang;Cheng, Peilin;Sha, Hang;Yue, Huamei;Wan, Chaoyang;Zhang, Yingyu;Zhang, Lang;Zhang, Hui;Wei, Qiwei;Wei, Qiwei
关键词：Blunt snout bream; Microsatellite; Mitochondrial DNA; Genetic diversity; Genetic differentiation
-
Genetic Diversity and Population Structure of Chinese Longsnout Catfish (Leiocassis longirostris) Using Microsatellite DNA Markers
作者：Hou, Yanling;Ye, Huan;Fan, Jiahui;Li, Junyi;Yue, Huamei;Ruan, Rui;Li, Chuangju;Song, Xinhua;Shao, Jian;Wang, Yizhou;Lin, Danqing
关键词：Leiocassis longirostris; microsatellite; genetic diversity; population structure
-
Metabolomics in rare minnow (Gobiocypris rarus) after infection by attenuated and virulent grass carp reovirus genotype II
作者：Ma, Jie;Fan, Yuding;Ma, Jie;Xu, Chen;Zhou, Yong;Jiang, Nan;Xue, Mingyang;Cao, Jiajia;Li, Shuang;Fan, Yuding;Cao, Jiajia
关键词：Metabolomics; Grass carp reovirus; Rare minnow; Gobiocypris rarus; Spleen; Hepatopancreas
-
Isolation and characterization of glutathione S-transferase genes and their transcripts in Saccharina japonica (Laminariales, Phaeophyceae) during development and under abiotic stress
作者：Lu, Chang;Li, Shuang;Cheng, Mengzhen;Duan, Delin;Lu, Chang;Zhang, Pengyan;Li, Shuang;Cheng, Mengzhen;Zhang, Pengyan;Li, Shuang;Cheng, Mengzhen
关键词：Saccharina japonica; Glutathione S-transferase; Transcriptome; Gene expression; Abiotic stresses; Enzyme activity assay
