1Dissecting Genetic Networks Underlying Complex Phenotypes: The Theoretical Framework

作者： Zhang, Fan; Zhai, Hu-Qu; Xu, Jian-Long; Gao, Yong-Ming; Zheng, Tian-Qing; Fu, Bin-Ying; Li, Zhi-Kang; Paterson, Andrew H.; Ali, Jauhar; Wu, Rong-Ling; Li, Zhi-Kang; SCI

机构： Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing, Peoples R China; Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA; Penn State Univ, Ctr Stat Genet, Hershey, PA USA; Int Rice Res Inst, Plant Breeding Genet & Biotechnol;

来源：PLOS ONE

年份：2011

2Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response

作者： Zhang, Fan; Huang, Li-Yu; Zhang, Fan; Zhuo, Da-Long; Li, Zhi-kang; Zhou, Yong-Li; Huang, Li-Yu; Ali, Jauhar; Cruz, Casiana Vera; Du, Zheng-Lin; SCI

机构： Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing 100081, Peoples R China; Yunnan Acad Agr Sci, Food Crops Res Inst, Kunming 650250, Yunnan, Peoples R China; Int Rice Res Inst, Manila, Philippines; Chinese Acad Sci, Beijing Inst Gen, Beijing 100029, Peoples R China;

来源：BMC GENOMICS

关键词： Rice Xanthomonas oryzae pv. oryzae R gene Transcriptome sequencing

年份：2015

3Genome-wide association analysis identifies resistance loci for bacterial blight in a diverse collection of indica rice germplasm

作者： Zhang, Fan; Wu, Zhi-Chao; Wang, Ming-Ming; Zhang, Fan; Xu, Jian-Long; Zhou, Yong-Li; Li, Zhi-Kang; Wu, Zhi-Chao; Wang, Ming-Ming; Zhang, Fan; Dingkuhn, Michael; Dingkuhn, Michael; Xu, Jian-Long; Zhou, Yong-Li; Li, Zhi-Kang; SCI

机构： Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing, Peoples R China; Chinese Acad Agr Sci, Grad Sch, Beijing, Peoples R China; Int Rice Res Inst, Crop & Environm Sci Div, Los Bano;

来源：PLOS ONE

年份：2017

4Genome-Wide Phylogenetic Analysis of Stress-Activated Protein Kinase Genes in Rice (OsSAPKs) and Expression Profiling in Response to Xanthomonas oryzae pv. oryzicola Infection

作者： Xu, Mei-Rong; Huang, Li-Yu; Zhang, Fan; Zhu, Ling-Hua; Zhou, Yong-Li; Li, Zhi-Kang; Xu, Mei-Rong; SCI

机构： Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing 100081, Peoples R China; South China Agr Univ, Coll Resources & Environm, Guangzhou 510642, Guangdong, Peoples R China;

来源：PLANT MOLECULAR BIOLOGY REPORTER

关键词： Rice OsSAPK Phylogenetic analysis Xanthomonas oryzae pv. oryzicola

5Complex molecular mechanisms underlying seedling salt tolerance in rice revealed by comparative transcriptome and metabolomic profiling

作者： Wang, Wen-Sheng; Zhao, Xiu-Qin; Li, Min; Huang, Li-Yu; Xu, Jian-Long; Zhang, Fan; Cui, Yan-Ru; Fu, Bin-Ying; Li, Zhi-Kang; Li, Min; Xu, Jian-Long; Fu, Bin-Ying; Li, Zhi-Kang; SCI

机构： Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing 100081, Peoples R China; Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop;

来源：JOURNAL OF EXPERIMENTAL BOTANY

关键词： ABA metabolomics molecular mechanisms Oryza sativa L salt tolerance transcriptome

6The power of selection: Dissecting phenotypic plasticity and linkage drag underlying yield traits of rice (Oryza sativa) using selective introgression

作者： Shi, Ying-Yao; Zeng, Wei; Li, Min; Xiang, Chao; Chen, Man-Yuan; Shen, Qian; Li, Fei; Zhang, Guo-Gen; Liang, Lun-Ping; Li, Zhi-Kang; Xiang, Chao; Liu, Hai-Yan; Zhang, Fan; Gao, Yong-Ming; Li, Zhi-Kang; Cui, Yan-Ru; Li, Zhi-Kang; SCI

机构： Anhui Agr Univ, Coll Agron, Hefei, Peoples R China; Chinese Acad Agr Sci, Inst Crop Sci, Beijing, Peoples R China; Hebei Agr Univ, Coll Agron, Baoding, Peoples R China; Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Guangdong Lab Lingnan Modern Agr, Shenzhen Branch, Shenzhen, Peoples R China;

来源：PLANT BREEDING

关键词： epistasis; genetic drag; genotype-by-environment interaction; rice; selection

年份：2022

7SS1 (NAL1)- and SS2-Mediated Genetic Networks Underlying Source-Sink and Yield Traits in Rice (Oryza sativa L.)

作者： Xu, Jian-Long; Zhang, Fan; Zheng, Tian-Qing; Zhao, Xiu-Qin; Cui, Yan-Ru; Chen, Kai; Zhang, Qiang; Li, Zhi-Kang; Xu, Jian-Long; Li, Zhi-Kang; Wang, Yun; Wu, Yuan; Lin, Hong-Xuan; Wang, Yong-Hong; Li, Jia-Yang; SCI

机构： Chinese Acad Agr Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Inst Crop Sci, Beijing 100081, Peoples R China; Chinese Acad Agr Sci, Shenzhen Inst Innovat Breeding, Sh;

来源：PLOS ONE

年份：2015

8Temporal profiling of primary metabolites under chilling stress and its association with seedling chilling tolerance of rice (Oryza sativa L.)

作者： Zhao, Xiu-Qin; Wang, Wen-Sheng; Zhang, Fan; Zhang, Ting; Fu, Bin-Ying; Li, Zhi-Kang; Zhao, Wen; SCI

机构： Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing 100081, Peoples R China; Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China;

来源：RICE

关键词： Primary metabolites Seedling chilling tolerance Transcriptomic responses Rice

年份：2013

9Rice breeding in the post-genomics era: from concept to practice

作者： Li, Zhi-Kang; Zhang, Fan; Li, Zhi-Kang; Zhang, Fan; SCI

机构： Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing 100193, Peoples R China; CAAS, Shenzhen Inst Breeding & Innovat, Shenzhen, Peoples R China;

来源：CURRENT OPINION IN PLANT BIOLOGY

年份：2013

10Genome-wide response to selection and genetic basis of cold tolerance in rice (Oryza sativa L.)

作者： Zhang, Fan; Gao, Yong-Ming; Li, Zhi-Kang; Ma, Xiu-Fang; Hao, Xian-Bin; SCI

机构： Chinese Acad Agr Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Inst Crop Sci, Beijing 100193, Peoples R China; Liaoning Acad Agr Sci, Shenyang, Liaoning, Peoples R China;

来源：BMC GENETICS

关键词： Selection Functional genetic units Non-random association Epistasis Hidden genetic diversity

年份：2014