1Insights into the architecture of human-induced polygenic selection in Duroc pigs

作者： Chen, Zitao; Teng, Jinyan; Diao, Shuqi; Xu, Zhiting; Ye, Shaopan; Zhang, Zhe; Li, Jiaqi; Chen, Zitao; Zhang, Zhe; Pan, Yuchun; Ye, Shaopan; Qiu, Dingjie; Zhang, Qin; SCI

机构： South China Agr Univ, Coll Anim Sci, Natl Engn Res Ctr Breeding Swine Ind, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Guangzhou 510642, Peoples R China; Zhejiang Univ, Coll Anim Sci, Dept Anim Sci, 866 Yuhangtang Rd, Hangzhou 310058, Peoples R China; Shantou Univ, Guangdong Prov Key Lab Marine Biotechnol, 243 Daxue Rd, Shantou 515063, Peoples R China; Fujian Yongcheng Agr & Anim Husb Sci Tech Grp Co, Fuqing 350399, Peoples R China; Shandong Agr Univ, Coll Anim Sci & Technol, Dept Anim Genet & Breeding, Tai An 271018, Shandong, Peoples R China;

来源：JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY

关键词： Artificial selection; GWAS; Pig; Reproductive organ; Selection signatures

年份：2022

2Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population

作者： Ye, Shaopan; Yuan, Xiaolong; Lin, Xiran; Gao, Ning; Luo, Yuanyu; Chen, Zanmou; Li, Jiaqi; Zhang, Xiquan; Zhang, Zhe; SCI

机构： South China Agr Univ, Coll Anim Sci, Natl Engn Res Ctr Breeding Swine Ind, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Guangzhou, Guangdong, Peoples R China; South China Agr Univ, Coll Anim Sc;

来源：JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY

关键词： Chickens; Imputation; Re-sequencing; SNP

年份：2018

3Genome-wide association studies for the number of animals born alive and dead in duroc pigs

作者： Chen, Zitao; Ye, Shaopan; Teng, Jinyan; Diao, Shuqi; Yuan, Xiaolong; Chen, Zanmou; Zhang, Hao; Li, Jiaqi; Zhang, Zhe; SCI

机构： South China Agr Univ, Coll Anim Sci, Guangdong Prov Key Lab Agro Anim Genom & Mol Bree, Guangzhou 510642, Guangdong, Peoples R China;

来源：THERIOGENOLOGY

关键词： Duroc; Pig; GWAS; Reproductive traits; Mortality

年份：2019

4Genetic Diversity of Indigenous Pigs from South China Area Revealed by SNP Array

作者： Diao, Shuqi; Huang, Shuwen; Xu, Zhiting; Ye, Shaopan; Yuan, Xiaolong; Chen, Zanmou; Zhang, Hao; Zhang, Zhe; Li, Jiaqi; SCI

机构： South China Agr Univ, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Natl Engn Res Ctr Breeding Swine Ind, Coll Anim Sci, Guangzhou 510642, Guangdong, Peoples R China;

来源：ANIMALS

关键词： Ne; genetic diversity; LD; population structure; selection signatures; South China indigenous pigs

年份：2019

5Genome-wide DNA methylation analysis of pituitaries during the initiation of puberty in gilts

作者： Yuan, Xiaolong; Li, Zhonghui; Ye, Shaopan; Chen, Zitao; Huang, Shuwen; Zhong, Yuyi; Zhang, Hao; Li, Jiaqi; Zhang, Zhe; SCI

机构： South China Agr Univ, Natl Engn Res Ctr Breeding Swine Ind, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Coll Anim Sci, Guangzhou, Guangdong, Peoples R China;

来源：PLOS ONE

年份：2019

6Genome-Wide DNA Methylation Analysis of Hypothalamus During the Onset of Puberty in Gilts

作者： Yuan, Xiaolong; Zhou, Xiaofeng; Chen, Zitao; He, Yingting; Kong, Yaru; Ye, Shaopan; Zhang, Zhe; Zhang, Hao; Li, Jiaqi; Gao, Ning; SCI

机构： South China Agr Univ, Coll Anim Sci, Natl Engn Res Ctr Breeding Swine Ind, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Guangzhou, Guangdong, Peoples R China; Sun Yat Sen Univ, Guangzhou Higher Educ Mega Ctr, Sch Life Sci, State Key Lab Biocontrol, Guangzhou, Guangdong, Peoples R China;

来源：FRONTIERS IN GENETICS

关键词： genome-wide DNA methylation; hypothalamus; QTL of age at puberty in pigs; onset of puberty; gilts

年份：2019

7Accuracy of whole genome prediction with single-step GBLUP in a Chinese yellow-feathered chicken population

作者： Gao, Ning; Teng, Jinyan; Pan, Rongyang; Ye, Shaopan; Li, Jiaqi; Zhang, Hao; Zhang, Xiquan; Zhang, Zhe; Li, Xiujin; SCI

机构： South China Agr Univ, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Key Lab Chicken Genet Breeding & Reprod, Minist Agr,Coll Anim Sci, Wushan Rd 483, Guangzhou 510642, Guangdong, Peoples R China; Zhongkai Univ Agr & Engn, Coll Anim Sci & Technol, Guangdong Prov Key Lab Waterfowl Hlth Breeding, Guangzhou 510225, Guangdong, Peoples R China;

来源：LIVESTOCK SCIENCE

关键词： Genetic evaluation; Growth traits; Carcass traits; Genome selection; Single step procedure

年份：2019

8Genomic Prediction of Complex Phenotypes Using Genic Similarity Based Relatedness Matrix

作者： Gao, Ning; Teng, Jinyan; Ye, Shaopan; Yuan, Xiaolong; Huang, Shuwen; Zhang, Hao; Zhang, Xiquan; Li, Jiaqi; Zhang, Zhe; SCI

机构： South China Agr Univ, Natl Engn Res Ctr Breeding Swine Ind, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Coll Anim Sci, Guangzhou, Guangdong, Peoples R China; South China Agr Univ, Natl Engn Re;

来源：FRONTIERS IN GENETICS

关键词： genomic prediction; genomic selection; gene annotation; haplotype models; complex phenotypes

年份：2018

9Genome wide association study on feed conversion ratio using imputed sequence data in chickens

作者： Wang, Jiaying; Yuan, Xiaolong; Ye, Shaopan; Huang, Shuwen; He, Yingting; Zhang, Hao; Li, Jiaqi; Zhang, Xiquan; Zhang, Zhe; SCI

机构： South China Agr Univ, Coll Anim Sci, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Guangzhou 510642, Guangdong, Peoples R China; South China Agr Univ, Coll Anim Sci, Guangdong Prov Key Lab Agroanim Genom & Mol Breed;

来源：ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

关键词： Genome-wide Association Study (GWAS); Imputed Whole Sequence Data; Feed Conversion Ratio; Chicken

年份：2019

10Genome-wide association study on chicken carcass traits using sequence data imputed from SNP array

作者： Huang, Shuwen; He, Yingting; Ye, Shaopan; Wang, Jiaying; Yuan, Xiaolong; Zhang, Hao; Li, Jiaqi; Zhang, Xiquan; Zhang, Zhe; SCI

机构： South China Agr Univ, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Coll Anim Sci, Guangzhou 510642, Guangdong, Peoples R China; South China Agr Univ, Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Coll Anim Sci;

来源：JOURNAL OF APPLIED GENETICS

关键词： Chicken; GWAS; Imputation; Sequence data; Carcass traits

年份：2018